Gene detail

Detail information of GWHGAAEX014269/evm.TU.scaffold_59.10

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|407462264\|ref\|YP_006773581.1\|	2.00E-54	SNF2-like protein [Candidatus Nitrosopumilus koreensis AR1]
KOG	KOG1000	0	Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily
nr	gi\|672161060\|ref\|XP_008800329.1\|	0	PREDICTED: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 isoform X1 [Phoenix dactylifera]
Swissprot	tr\|B5BT18\|BTAF1_ARATH	1.00E-35	TATA-binding protein-associated factor BTAF1
trEMBL	tr\|A0A067K6X3\|A0A067K6X3_JATCU	0	Uncharacterized protein {ECO:0000313\|EMBL:KDP28020.1}
TAIR	AT1G48310	0	chromatin remodeling factor18

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000068	176068	249296	+

Transcript Sequence
>GWHTAAEX014269 CCGATCACTAAATAAATGAGAAATTGGTTTCTTATAAAATAACAACATAGATTTTGTTTCAAATTGCGGTTGTAAGCAGTTAATTAATAAATAGTAATATTATCAATTAATTTTTGGCGATAAAAACAATACAATAATAATATTTTCAAGCATGCGCATTCGTAGTATTTTTAAACAACAAGCACACAAGATTGATGCTTTGTTTGCAGCCCTATCGATGCATCGCCTTCGTCCCAATTTTGTTATATCTATATCCAAGCGTAGTTTTTATAGCAAAAGAAGGCAACCGCAGCAGAGAACTGTAATGACTGGTTTCGAAGAAGACTGGGACTTCAGCGCCGAGGACCTAGAACTCCTGGAGCAAGATGCCATGAGAAAGATTTCTGAGAGGAAATCCTCCTCCGCTACCGCCAGTGCCTCGTCTCAGCCCTCGTCTGCTTTACATCTTTCTCCGCGTGCCTCTGCTTCCCTTCATACACCATGTCAAGCTTCTCCTTCAAGAACTTCCTTGGAATCCCGATATGGCGGGGCAGAGGCTTCCTCTAGGCTGCTTGATGATACCTCTAGAGACACCAATAAGTTTATCCATCAAGATGACTTTCCACATCTTTATGTTAGACTTTTTTTTCATTCTACTGGTCTTATAGCTGCAAAGTTTCCTTATAATCAGATTCTAGTGCAGGCGTTTCACAAAATCCCCAAAGCTAGCTGGAAACCGCAAGAGAGGTTATGGATGTTCCCTCTGTCCTCTTTGAAGTTGGCTGAAGAGGTCCTTAAGGGAGTGAATGGAGTTAACGTTGAGTTGCAGAGTCTTGATCCACTGGTATGTCGTGCTCTTGCTGCTACAAATTCTGCCCCCGACCTTAGTGAATTGTATGATAAGATACCAAGTTTCATGGAATCAAAACTTCTACCATTTCAGCGCGAAGGAGTAAGGTTTGTGTTGCAACATGGTGGTCGAGCATTACTGGCGGATGAGATGGGGCTTGGGAAGACGTTACAGGCGCTTGCTGTTGCTTCTTGCCTTAGTGAGTCCTGGCCTGTGCTTGTTCTGACACCTTCTTCCTTGCGTTTGCATTGGGCTTTTATGATTCAGCATTGGCTTGGCATCCCTGCAGAAGATATACTGGTAGTCTTATCTCAAGCGGGATCAAATAGAAGTGGCTTTAAAATAGCTTTTTCATGCACGAAGGTAGCCATTCGACTGGATGGCACTTTCAACATCGTATCCTATGATGCTGTACCTAAACTACAAAAAGTGCTTCTGTCTTCTGCTTTTAAGATTGTAATCGCAGATGAGTCACATTTTTTGAAGAATGCTCAAGCTAAGAGGACAAGTGCTTCGGTTCCAATTCTGCAGAAAGCTAACTATGCAATTTTACTAAGTGGAACCCCTGCTCTGTCACGACCAATTGAGCTCTTTAAACAGCTTGAAGCCTTGCACCCTGATGTTTATAAAAATGTTCATGAGTATGGTAATCGATATTGCAAAGGTGGTGTTTTTGGATTATACCAAGGTTCTAGCAATCATGATGAGCTGCATAATTTGATGAAAGGAACTGTGATGATTCGCAGGCTTAAGAATGATGTTCTTTCAGAGCTCCCAGTGAAGCGTCGGCAGCAGGTATACCTGAACTTGAATGAAAAAGATTTGAAAGAGATCAGGGCTTTGTTCCGAGAGCTGGAGGCAGTAAAGAGCAAAATCCAATCTTGCAACTCTGATGAAAGTTTGAAGGCACTAAAATTTACTCAAAAGAATCTTATCAGCAAGATATACAATGACTCTGCTGAAGCTAAAATACCAGCAGTTCTTGACTATATTAGCACTGTCATTGAGGGGGATTGCAAATTCCTAGTATTTGCTCACCATCTAACAATGATTGAAGCTCTGCATCAATATTTTTTGAAGAAGAAAGTTGGCTGCATTAAAATTGATGGTAGCACTCCAACAATATCAAGACAAACTCTAGTTTCCCAATTTCAGGAAAATTTTGAAATAAAGGCAGCCATTCTTTCTATTCGAGCTGGAGGTGTTGGGCTAACTCTGACAGCAGCAAGCACCGTCATCTTTGCGGAGCTTTCCTGGACCCCTGGTGATTTGATTCAGGCAGAAGACCGCGCTCATCGAATTGGTCAGGTGACATCAGTGAATATATACTACCTGCTGGCCAACGAGACTGTTGATGACATTATCTGGGATGTTGTTCAAAGCAAATTGGAGAATTTAGGGCAGGTTCTTGATGGTGAGCTAAATAATAAGCTAGAAGTGGAGACCAGCAGTCAAACAAGTACTAATGCAATCAGCAGCAGCCCAGCAAAGCAGAAAACATTGGACTCCTTTCTCAAGCGTTGCCCTAATGTTGCAGCTGCTTCCCCCTCTAAATCTAAAGTGCCTAAATATTGCTGAATTCCCCCTAAATCCTTTCTTTCTTTTTTTGTTTTATAAAAGTTTCTTTTTTGGTTTATGTGCATGTATTTGCATGACGCTGTCATGCTACAACACTTTTTGGCATCATATTTAGGGTTTTGTTTAGTTGATGAAAAGCGTACGCTGAGAACATTAAGGAGGCATAGTGAATGGATGGGATCCTGAAATGGAATACTCATGGCCTAAAATTTTTTAAGGGCTGATTTTATACTATGAGTTTCTTATATTTTGAAGGAAAATCCAATAATAATAAATATTAATCTTTCTTTTAATGGTCCTTTCCGATACAAGTTTTTTTTTTTCTATGTACTGATGCTTAAGAACCTTAAATAAAAATGTATGTTAAGAG

Network for GWHGAAEX014269

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00176.22	SNF2_N	271	503	2.40E-26
PF00271.30	Helicase_C	559	661	2.70E-13

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	SNF2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005524	Molecular Function	ATP binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	7.280
SRP064423	SRR2545915	Juvenile tuber	8.600
SRP108465	SRR5643513	five period of Gastrodia elata	7.980
	SRR5643514	five period of Gastrodia elata	9.500
	SRR5643515	five period of Gastrodia elata	7.390
	SRR5643524	five period of Gastrodia elata	8.000
	SRR5643525	five period of Gastrodia elata	9.100
	SRR5643528	five period of Gastrodia elata	8.230
	SRR5643658	five period of Gastrodia elata	8.590
	SRR5643659	five period of Gastrodia elata	9.260
	SRR5643660	five period of Gastrodia elata	9.910
	SRR5643661	five period of Gastrodia elata	8.160
	SRR5643662	five period of Gastrodia elata	9.200
	SRR5643663	five period of Gastrodia elata	9.720
	SRR5643664	five period of Gastrodia elata	11.350
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	8.200
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	8.700
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	7.230
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	7.800
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	8.880
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	8.650
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	8.190
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	7.480
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	6.660
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	7.030
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	7.320
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	7.320
SRP279888	Gastro	Gastrodia elata tuber	17.08
	Juven	Juvenile tuber	14.61
	Mother_Gastro	Mother tuber of Gastrodia elata	11.08
	Mother_Juven	Mother tuber of Juvenile	12.05