Detail information of GWHGAAEX014273/evm.TU.scaffold_59.16
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG0810 | 2.00E-96 | SNARE protein Syntaxin 1 and related proteins |
| nr | gi|743886690|ref|XP_010910206.1| | 9.24E-125 | PREDICTED: syntaxin-related protein KNOLLE [Elaeis guineensis] |
| Swissprot | tr|Q42374|SY111_ARATH | 6.00E-97 | Syntaxin-related protein KNOLLE |
| trEMBL | tr|W1P1P3|W1P1P3_AMBTC | 2.00E-121 | Uncharacterized protein {ECO:0000313|EMBL:ERN00870.1} |
| TAIR | AT1G08560 | 2.00E-96 | syntaxin of plants 111 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000068 | 314617 | 315853 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX014273
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00804.24 | Syntaxin | 44 | 242 | 2.00E-58 |
| PF05739.18 | SNARE | 245 | 295 | 7.70E-14 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K08486 | STX1B_2_3 | SNARE interactions in vesicular transport | map04130 |
| Synaptic vesicle cycle | map04721 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006886 | Biological Process | intracellular protein transport |
| GO:0016192 | Biological Process | vesicle-mediated transport |
| GO:0005484 | Molecular Function | SNAP receptor activity |
| GO:0016020 | Cellular Component | membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.070 |
| SRR2545915 | Juvenile tuber | 0.000 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 0.970 |
| SRR5643514 | five period of Gastrodia elata | 2.990 | |
| SRR5643515 | five period of Gastrodia elata | 1.420 | |
| SRR5643524 | five period of Gastrodia elata | 1.940 | |
| SRR5643525 | five period of Gastrodia elata | 0.070 | |
| SRR5643528 | five period of Gastrodia elata | 0.070 | |
| SRR5643658 | five period of Gastrodia elata | 0.050 | |
| SRR5643659 | five period of Gastrodia elata | 0.000 | |
| SRR5643660 | five period of Gastrodia elata | 0.000 | |
| SRR5643661 | five period of Gastrodia elata | 0.310 | |
| SRR5643662 | five period of Gastrodia elata | 0.180 | |
| SRR5643663 | five period of Gastrodia elata | 0.140 | |
| SRR5643664 | five period of Gastrodia elata | 0.060 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 0.720 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 2.360 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 0.600 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 2.100 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 0.410 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.070 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 1.120 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 2.010 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 9.680 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 2.590 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 2.660 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 2.660 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.06 |
| Juven | Juvenile tuber | 0.05 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.15 | |
| Mother_Juven | Mother tuber of Juvenile | 0.30 |