Detail information of GWHGAAEX014274/evm.TU.scaffold_59.19
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 2.00E-110 | FOG: PPR repeat |
| nr | gi|743846742|ref|XP_010938918.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Elaeis guineensis] |
| Swissprot | tr|Q683I9|PP295_ARATH | 3.00E-115 | Pentatricopeptide repeat-containing protein At3g62890 |
| trEMBL | tr|F6I7L7|F6I7L7_VITVI | 4.00E-172 | Putative uncharacterized protein {ECO:0000313|EMBL:CCB62936.1} |
| TAIR | AT3G62890 | 2.00E-110 | Pentatricopeptide repeat (PPR) superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000068 | 359555 | 361844 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX014274
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13041.5 | PPR_2 | 91 | 135 | 6.70E-08 |
| PF01535.19 | PPR | 159 | 183 | 0.0048 |
| PF13041.5 | PPR_2 | 251 | 299 | 5.30E-10 |
| PF01535.19 | PPR | 326 | 350 | 0.053 |
| PF14432.5 | DYW_deaminase | 425 | 467 | 3.10E-06 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 2.790 |
| SRR2545915 | Juvenile tuber | 1.750 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 3.110 |
| SRR5643514 | five period of Gastrodia elata | 2.430 | |
| SRR5643515 | five period of Gastrodia elata | 3.070 | |
| SRR5643524 | five period of Gastrodia elata | 2.090 | |
| SRR5643525 | five period of Gastrodia elata | 1.320 | |
| SRR5643528 | five period of Gastrodia elata | 0.360 | |
| SRR5643658 | five period of Gastrodia elata | 0.700 | |
| SRR5643659 | five period of Gastrodia elata | 3.300 | |
| SRR5643660 | five period of Gastrodia elata | 3.660 | |
| SRR5643661 | five period of Gastrodia elata | 3.730 | |
| SRR5643662 | five period of Gastrodia elata | 4.680 | |
| SRR5643663 | five period of Gastrodia elata | 3.980 | |
| SRR5643664 | five period of Gastrodia elata | 4.940 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 3.110 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 3.550 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 3.340 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 3.040 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 2.610 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 2.210 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 2.900 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 2.290 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 2.420 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 2.940 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 4.270 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 4.270 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 3.44 |
| Juven | Juvenile tuber | 1.45 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 1.24 | |
| Mother_Juven | Mother tuber of Juvenile | 0.70 |