Detail information of GWHGAAEX014275/evm.TU.scaffold_59.20


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|476001835|gb|AGI62059.1|0SQUAMOSA promoter-binding-like 11 [Erycina pusilla]
Swissprottr|Q9SMX9|SPL1_ARATH0Squamosa promoter-binding-like protein 1
trEMBLtr|M9QXM2|M9QXM2_9ASPA0SQUAMOSA promoter-binding-like 11 {ECO:0000313|EMBL:AGI62059.1}
TAIRAT3G600300squamosa promoter-binding protein-like 12

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000068372488407101+
Transcript Sequence

Network for GWHGAAEX014275

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03110.13SBP1462194.00E-28
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilySBP

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003677Molecular FunctionDNA binding
GO:0005634Cellular Componentnucleus

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms42.970
SRR2545915Juvenile tuber40.410
SRP108465SRR5643513five period of Gastrodia elata48.160
SRR5643514five period of Gastrodia elata39.190
SRR5643515five period of Gastrodia elata49.720
SRR5643524five period of Gastrodia elata43.620
SRR5643525five period of Gastrodia elata70.820
SRR5643528five period of Gastrodia elata58.140
SRR5643658five period of Gastrodia elata65.100
SRR5643659five period of Gastrodia elata43.350
SRR5643660five period of Gastrodia elata39.570
SRR5643661five period of Gastrodia elata42.170
SRR5643662five period of Gastrodia elata51.520
SRR5643663five period of Gastrodia elata49.210
SRR5643664five period of Gastrodia elata45.180
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_136.580
SRR6049655Rhizomagastrodiae_C368-T10_good_136.270
SRR6049656Rhizomagastrodiae_C368-T07_good_141.950
SRR6049657Rhizomagastrodiae_C368-T07_good_136.250
SRR6049658Rhizomagastrodiae_C368-T04_good_135.470
SRR6049659Rhizomagastrodiae_C368-T04_good_137.740
SRR6049660Rhizomagastrodiae_C368-T01_good_139.230
SRR6049661Rhizomagastrodiae_C368-T04_good_140.690
SRR6049662Rhizomagastrodiae_C368-T01_good_141.710
SRR6049663Rhizomagastrodiae_C368-T01_good_144.060
SRR6049664Rhizomagastrodiae_C368-T10_good_146.200
SRR6049665Rhizomagastrodiae_C368-T10_good_146.200
SRP279888GastroGastrodia elata tuber 38.13
JuvenJuvenile tuber30.93
Mother_GastroMother tuber of Gastrodia elata 50.40
Mother_JuvenMother tuber of Juvenile 45.14