Gene detail

Detail information of GWHGAAEX014277/evm.TU.scaffold_59.22

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG2231	Predicted E3 ubiquitin ligase
nr	gi\|743843787\|ref\|XP_010938163.1\|	PREDICTED: zinc finger protein 598-like [Elaeis guineensis]
trEMBL	tr\|K3Z3U0\|K3Z3U0_SETIT	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Si021208m}
TAIR	AT3G62240	RING/U-box superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000068	417006	433024	+

Transcript Sequence
>GWHTAAEX014277 ATACCTTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATATGTGGGCCATTGGCCCATTTTGATATTAAATTAATTTTTATTTGGGGAGAGCTTGTACGGCAGCTTGCTGCTGGGCTCTCATGCGTCGCTTTTGCGTAGCACTATTGTATGAGCCAGGCGCACCCTATCAATTTCAAAGCTAAGTTCTGAGTTCTCCGACGAACTTTCAACATACGGTGACGAACTCTGACTCGTCCTCTTTACTCCTCTTTTACGATCCCCGTCGATCTTCAGGCACCGATAGCTCTTATGGAAGATTGCTGCGCTGTGTGTGCCGAATCCCTCGAGTGGGTGGCTTATGGATCTTGCGGTCATCGCGATGTATGCTCCACCTGTGTTGTCCGCCTTCGTTTTGTTCTCAGCGATTGCCGCTGCTGCATTTGCAAGACTGAATGTCCTGCTGTCTTTATCACCCGGGCTTTGGGGAGTTTCACTGAGTCAAGAGTAAATTTTTTGGATTTCCCACCCGGTGCTACTGAGGGCCAGCATGGGAAGTATTGGTACCACGAGGATTCTAAGGCATTTTTTGATGATGTAGATCATTACAAAATGATAAGCGCAATGTGCAGACTTTCATGTAGTGTCTGTGATAATAATGCTGAGGAATTAAGGAGAGACAGTAATAGCAGAAAGCGTAAATTTGTTAACATGGAGCAGTTGAAAGGACATCTCTATCATCAGCACCGAATGTTCATGTGCAATTTATGTCTGGAAGGGAGGAAGGTGTTTATCTCAGAGCAAAAGCTCTACACTAGAGTGCAGCTGACTCAGCATGTAAGCACAGGCGACTCAGAGGTGGACGGCACCGAGAGTGAGCGTGGCGGCTTTGCAGGCCACCCCATGTGCGAATTCTGCAAATCCCCATTTTACGGAGACGCTGAACTTTACATGCACATGTCTAGAGAACATTTCACATGCCACATTTGCCAGAGGCAGCACCCTGGTCAGTATGATTATTATAGGAACTACGAAGATCTGGAGACTCATTTCCGTCAAGAGCATTTCTTATGTGAAAATGAAAGCTGCATCGCAAAGAAGTTTGTTGTTTTTCAATCCGATTCTGAAATGAAGAGGCACAATGCAATTGAGCATGGCGGTCACATGTCACGCGCCAAGAGGAACGCTGCCCTTCAGATACCTGTTAGTTTTAGATTTCGGCGAAATGAGAATGACCGGGGAGGGAGAAGGCACGATCTTCGTTCTGAACCATCAAGTGACCAGATGACTCTCGCAATCCAAGCGAGCTTGGAGGCCGCGCTTTCAGAGGGCAGATCTCGCGAATCATCTTCATCTCATGGCCAAACAAGCCAAGCTGATGTGATCGCAAGTTCCTTTGAACCGTTAGCCATTACATCTCAGCCTGAGCCGCTCTCCTCGAGATCTGTTCTTCAGGATATTTCATTTCCTCCCCTCTCTGATTTTGAACCGCCGCCGCCTGCCTCAAGATATGCTCAGGCGCTTAATCAAAGGAGTGGAGCCAATTGGCGAGAGGAGTCGTTTCCTCCTTTGCATGGGGTTAAAGAAAGTTTTAATAAGCCGAAGCCTGAGCCTGTCTCGAATGGTTTGGCCGCAGATACGATCGCAGCTCGTATCAGTAAACGTAACAAGGGTGCTGTGAAACTTATACACTCTGCTCAGCCGAGACCGATCGAAAATCACGAGCTGGGTTCCATCGCTTCTTCGAGTTCTCACATGAGGCCTGCACAGATTTCGCCACCGACAGCGCCTTCAAATTCTTCTTCATATGCATCTGCTCTTCCTGCAAATTCGGCATGGAATTCAAGAATAAAACATTCGGCATCAGCTCCTAATCTCCAAAGCAGCTCACCTTCGGATAAGGAACCATCTTCTATTAAAGAATCTCTCCCTCGCGCTCATGCGGGCAACATCCAGAGAGCTAACAAATCTTTGGTAGAAAGCATTCGCTCCGGCTTAGGAATGGATGAGAATAAATACGCGGTGTTCAGAAGCATTTCTGCCGAATACCGTCAGGGTCTCATAAACTCTCCTGAATATCTCTCTTATGTGGAGCAGTTCGGTCTCCTGCATCTTGTTCTGGACCTCGCTCAGCTGTGCCCTGACCCCCTGAAACAGAAGGAGCTGATTGATGCTTATAATGCGAGCATTCTCGAAAATGGCGGCAATGCCGTGGGCTCGAAGAAAGGGGCGAGGAAGGGGAAGGAGAAGCAGAAAGCCGGGAATTCTACGGCGAAAGATGCGTTGGCGGACAGCATTCTGGAGCAGGTCAGGAAGCTACAGTCGGGCCGCCATCCTTCGGAGGGCGAAGTGGAAGTTTTGACCAAGGATGGGTACCGAGCAAACAACGGCAAAACTCCCTCCGAGTCAAATGTTGGCGAAAATTTAACCTCTACAAATTCGGATAAATGCGGCGAGGGCGCCAAGAGGAACAAAAAGACGTCGAAGTTCCATAGAGTACGCCTGGGAGACAGCTCAGCGTACCTCGATCTGCGCGATCGGCAAGCTAGCCCTGAGAAGAGCGACGATGAAAATATAAGCATGCAGGCTCGGGGAGTTTGGGGCAAAGGCGGCGGCGGCCAGCGGCTTTTTCCTCCGACAGGCACGTCCAAGTGATCTTATTTTTTACGCCTTGTTCTTTTGATAAGCAATTTTTGCCGCTGCGGGAAATGCTTTGGGTGTGAGTATTTTGAATTTCTGGCTCTGCTTTACCCCCCTGCCACAAACGGAGGCATCGTGTATCATACTTGTTTGCTGATATATATGCTCCAGTAAATTTTGTTTATTTTGTTAAAATTATATATATATATATATGTAT

Network for GWHGAAEX014277

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003676	Molecular Function	nucleic acid binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	102.960
SRP064423	SRR2545915	Juvenile tuber	57.440
SRP108465	SRR5643513	five period of Gastrodia elata	62.090
	SRR5643514	five period of Gastrodia elata	55.810
	SRR5643515	five period of Gastrodia elata	53.080
	SRR5643524	five period of Gastrodia elata	71.100
	SRR5643525	five period of Gastrodia elata	115.470
	SRR5643528	five period of Gastrodia elata	117.800
	SRR5643658	five period of Gastrodia elata	95.860
	SRR5643659	five period of Gastrodia elata	41.150
	SRR5643660	five period of Gastrodia elata	48.420
	SRR5643661	five period of Gastrodia elata	44.170
	SRR5643662	five period of Gastrodia elata	72.660
	SRR5643663	five period of Gastrodia elata	46.860
	SRR5643664	five period of Gastrodia elata	55.720
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	45.290
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	46.790
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	50.140
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	50.990
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	52.480
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	59.530
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	49.110
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	44.100
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	36.060
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	44.830
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	44.550
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	44.550
SRP279888	Gastro	Gastrodia elata tuber	42.79
	Juven	Juvenile tuber	49.56
	Mother_Gastro	Mother tuber of Gastrodia elata	122.23
	Mother_Juven	Mother tuber of Juvenile	107.80