Gene detail

Detail information of GWHGAAEX014290/evm.TU.scaffold_59.36

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG2165	Anaphase-promoting complex (APC), subunit 2
nr	gi\|672176123\|ref\|XP_008808132.1\|	PREDICTED: anaphase-promoting complex subunit 2 isoform X1 [Phoenix dactylifera]
Swissprot	tr\|Q8H1U5\|APC2_ARATH	Anaphase-promoting complex subunit 2
trEMBL	tr\|M0SG04\|M0SG04_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr3P19380_001}
TAIR	AT2G04660	anaphase-promoting complex/cyclosome 2

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000068	792716	826198	+

Transcript Sequence
>GWHTAAEX014290 CACATTGAAATCATATAGTACTTTTGCATATTCCGGTTCAGGGCCCAATTATATAATTCGAGCCGAGGCAATCCGGGTTGGCCCACTTAAGCTTCGAACCAGGCTGTCCGTGTCTTGGTTCACTGCTGCCCTAATTCGAGCGCACCTCCATAGCCGATTTCGCGGGTTTTTCGTATTCCCCCAAACCCGCTCTCGCCATGCTACACAACCCGACGATTCTCGATTCCTTGAGCGAGCAATCCATTGACGAGATTCTTCAGAGCTGGAACTCCTTCGTATCCTGCGTTGAGATCCTCCTCAGTGGGAATGACGACGTCTCCACCTCTTCTGAGTTATCTACTTCGGTGGCCATTTTGTGCAGAAATGGCTTGCGCCCCCTCTTGGAGGACCATTTCCTCCATTATCTTGAGGATGCGTTTACAGCAGGACCAGTCTTGATGTTCTGGCAGCACTTTGATAAGTATTCTGGCATGCAGAGATCAAATTTAAAAAATTATCAAATTCTGGTTGATCAACTTGAAGAAGCACTTAGCTCATCATTGGAACAGATATGCTCAGAAAAGAATTACCAGGAAAAATGCCTTGTTATGCTTATTCATGCTTTGCAGTTATATGAGGAGAGCATAACAACGGATAAAATGAATTCTGACTATCATGAATCCATTCTGCTTTCCAGATACCGCTTGATGGTATCTTCTGTTCTTCTGACAACCCTTCCTCCCCACTTTTCTGAGGTACTCCGCCTGTATTTTAAGCATAAATTGGAGGAGCTAAATACTATGATAGCTGCCAGTCATGACGATAGATTTGAATTTTTGAACAATGATGGAAATTTCAAGTATAATGCATCAGATGAAATGAGCATTGATGTGAGCCATCCTGAGTCTGCTGTGCCTAAGAACGATTCTTTAGTCAAAAGCATTGGAAAGGTTGTTCTTGATCTTAGGAATCTGGGTTTTACTGCTCTGACTGAGGATGCTTACGCTTCATCTATCTTTCAGCTTTTAAAGGCTAAAGTTCAGAACTTGGCAGTTGATGATTATAGAACCCCAGTTTTGCAGTCTATTAAAGAGTGGATTCAGGCTGTTCCGCTCCAGTTCTTGCATAATCTTTTATCATATTTAGGGGACTCATTCAATAACGATTGTGTTTCATCTGGTATTATATCACCTTTGGCTTCACGTCCTCTTTCATATCCCGGGATTGATGCTCCCTCCGAAGGGTTTGTCAGGTGGAAGCTTCGTCTGGAGTATTTTGCTTATGAGAAGTTACAAGACTTGAGAATTGAAAAGCTTTTTGAGATTATAGTGGATTACCCTGACAGCTCTTCTGCAATTGAAGATCTAAAGCAATGTTTAGAGTATACTGGGCAACATTCTAAACTTGTCGATTTATTTATTTCTTCTTTGAGATATCGATTGCTAACGGCAGGTGCTTCAACTAACGACATACTGCATCAATATGTTTCAACTATCAAAGCACTCAGAACAATAGATCCAACTGGTGTATTTTTGGATGCGGTAGGAGAGCCAATTAGGGATTATTTGAGGGGAAGAAAGGACACAATAAAATGTATTGTTACCATGCTTACTGATGGAAGTGGGGTAAACCCTAGTGGAGCAGGCAATGCTAGTGAAAGCCTTCTTGAAGAATTAAATAGAGAGGCTGAAAACCAAGAAATTGCTGATACTGATGACGATATAAATGTTGATGATAAGCAAGCTTGGGATAATGCTGAACGTTGGGAACCTGATCCAGTAGAAGCAGACCCAATGAAAGGCAGCAGGCATAAAGGAAAGATTGACGTACTTGAAATGCTGGTCAGCATAATTGGTTCCAAAGATCAGCTAGTTAATGAATACCGTGTAATGTTAGCTGAAAAGCTTCTTAATAAATATGATTACGACATTGACTTGGAGATACGAACTTTAGAGCTCCTTAAGATACACTTTGGAGAAAGCAGTATGCAGAAGTGTGAAATAATGGTTAATGATATTATCAGTTCCAAGCGGATAAATTCTAATATCAAGGCATCCAAACCCACACGAGCTATGGATGGTTCTGAGCAAGAAAAAGCCATGTCACTGCAATTTATCGATGCAACAATAATTTCTTCGAACTTTTGGCCACCAATTCAGGAGGAATCTCTTCAGGTTCCCTTACCTGTTGATCAACTTCTTACAGATTATGCAGAAAGGTTTCACGAAATCAAAACTCCTCGTAGGCTACTATGGAAAAAATATCTTGGGACAGTAAAGCTGGAACTGCAATTTGACAATCGAAGTGTTGAATTCAGTGTTACACCATCACATGCTACCATTATTATGCAATTCCAAGATAAAACTAGCTGGACTTCTAAAAGCCTTGCAGCTGTTGTTGGGCTACCTGTGGATATTCTTAACAGGCGAATAAGTTTTTGGATAAGTAAGGGCATAGTTACTGAATCTGAGGGAGTTGACTCTAATGATCTTGTATTTACACTTGTTGATGATGTCGCCAATGCAAACAGAAATGGTTATCCTATTGAAACTGAAGGAATGGATGAAGAAGGAGAAAGCTCTGTGGCTTCAGTTGAGGAACAGCTGCAGAAGGAAATGGTTATTTATCAGAAATTCATTGAAGGGATGCTAACAAACTTTGGCAGCATGACACTGGATAGAATACACAACACATTGAAGATGTTCTGTGTGGCTGATCCTTCTTATGACAAGTCACTTCAACAACTACAATGCTTTTTAGCTTTGCTTATATCTGAAGAAAAGTTGGATATAAAGAGCGGACAGTACTTCTTAAAAAGGTAGCTGCTCAAGTTTAGTGTTCTTTGCTATGTGCCCTCAACAGTGCCAAAACTGCGTGAATTTCACATGATTTGGCGTCTAGACAGCCTGGGGGTGGTCTATTTATTTAAGTATTTTTCATGTGAATGTATATATATATCTTGTAATTGTTGTATTTCACATAACACTTAAAAGTTTTTACATTTGGTTAATAATTATTTTAGACGTTTGCAAATTAATTTATTTGCATTCATTTTAGCCTGTGTAAATTATTTCTTATTAAAAAAGGTCTTTAAAAATGTTTACGGCTCTTTTGACATTTACAAATTGTTA

Network for GWHGAAEX014290

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00888.21	Cullin	539	738	1.00E-23
PF08672.10	ANAPC2	806	863	4.30E-21

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	Cullin

KEGG pathway

KO	Enzyme	pathway	mapID
K03349	APC2	Ubiquitin mediated proteolysis	map04120
		Cell cycle	map04110
		Cell cycle - yeast	map04111
		Meiosis - yeast	map04113
		Oocyte meiosis	map04114
		Progesterone-mediated oocyte maturation	map04914

Gene Ontology

GO term	Ontology	Name
GO:0006511	Biological Process	ubiquitin-dependent protein catabolic process
GO:0031625	Molecular Function	ubiquitin protein ligase binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	8.970
SRP064423	SRR2545915	Juvenile tuber	11.400
SRP108465	SRR5643513	five period of Gastrodia elata	8.970
	SRR5643514	five period of Gastrodia elata	10.770
	SRR5643515	five period of Gastrodia elata	10.670
	SRR5643524	five period of Gastrodia elata	10.810
	SRR5643525	five period of Gastrodia elata	5.850
	SRR5643528	five period of Gastrodia elata	5.010
	SRR5643658	five period of Gastrodia elata	5.740
	SRR5643659	five period of Gastrodia elata	7.990
	SRR5643660	five period of Gastrodia elata	7.470
	SRR5643661	five period of Gastrodia elata	6.390
	SRR5643662	five period of Gastrodia elata	7.380
	SRR5643663	five period of Gastrodia elata	7.310
	SRR5643664	five period of Gastrodia elata	6.090
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	11.320
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	13.580
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	11.270
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	10.800
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	9.950
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	10.170
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	11.620
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	11.830
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	12.640
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	11.470
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	11.830
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	11.830
SRP279888	Gastro	Gastrodia elata tuber	10.75
	Juven	Juvenile tuber	11.42
	Mother_Gastro	Mother tuber of Gastrodia elata	9.79
	Mother_Juven	Mother tuber of Juvenile	9.05