Gene detail

Detail information of GWHGAAEX014291/evm.TU.scaffold_59.37

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG1964	Nuclear pore complex, rNup107 component (sc Nup84)
nr	gi\|743768141\|ref\|XP_010914347.1\|	PREDICTED: nuclear pore complex protein NUP107 [Elaeis guineensis]
Swissprot	tr\|Q8L748\|NU107_ARATH	Nuclear pore complex protein NUP107 {ECO:0000303\|PubMed:21189294}
trEMBL	tr\|A0A067L851\|A0A067L851_JATCU	Uncharacterized protein {ECO:0000313\|EMBL:KDP40670.1}
TAIR	AT3G14120	Unannotated protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000068	827896	888217	-

Transcript Sequence
>GWHTAAEX014291 ATGGAAGCAGACATGGACACTTCCCAAACCTACGTTAACGCGGAAGATTTGAACAACAGGGAGCAATTTCGTCGCTACGGGAAAAGGCTGTCCGCTTCACGAACATCACCTTTTGGAAATTCTGTTTCGAGTGCTAGGCTATTACATGAAGGTAACAATATTCAGAAGAGACCCAATGCAGCACTTCTTCTTGATGAAATTAAACAGGAAGTTGAGAGTTATGATATTGATGGCTTGGAGCAAATTACTTCTAATGCAAAATATTCATTAAAAAGACAAGAATCTGATGATGGCCTTGGATTATCTGAACTCAGAACAAGCCATAATTTAGTTCATAATCAACCAATAAAATTATTGAAACAAGAAGATGACTTGTTAGTAGATGGTGGGGAGTCAGCCTTTTCTATATTTGCAACCCGAATGGATTCTGCTCTTCAAGGGTTAATTTCCTTTCCTGATCTTATTTTACAGTTTGAGAGCACATGCAGAAGTGTATCCGAGCTGATCAGGTACTCAATTAGCTTGGGCGGGAGGCATAGGGTGGTGGAGGATAAATTTTTGCAGCAGAAAGCCAAGTTCTTACTTGATGAAGCTGCCTCTTGGTCACTTCTTTGGTATCTATTTGGGAAAGGAAATCTCTCTTTATCCATATTCTTATGTCCATCAACCTCACATCAGGAAGCATGCCAGTTTGTTATGACAAATCTTATGGCACAATTTTGTATTCGTATTGTACTTTGGTTGCAAGGGCTAGCTGCAAAAGCTCTTGAGTTGGAAAAAAAGTTTAAAGGTTGTTACGTTGGTTCCTATCTTCCAAGTTCCGGTGTTTGGCTGCATACTCAAAGATTTTTGAAGAGAAAGATAAATAACCATTCGACAGTGCATCACTTGGATTTTGATGCTCCAACACGTGAAAAGGCTAAAATACATGCTGATGACATGAAACAGGATGAAGCTATTCTTGAAGATGTCTGGATTCTGCTAAGAGCTGGACACACTGAAGAGGCCTGCAAGCTTTGCTATTCTGCGGGTCAGCCATGGCGGGCTTCAACTTTGTGCCCTTTTGGGGGACTGGATTTATTACCATCCTTGGAAGCTGTTGTTAAAAATGGGAAGCCTAGGTCGCTACAGTCAATCGAACAGGAAAGTGGCATCGCTCATCAAATGCGACTTTGGAAATGGGCATGCTATTGTGCTTCAGAGAAATTAGCCAAACAAGATGGAGGGAAATATGAGATGGCTGTTTATGCTGTTCAGTGTAGCAACATGAAGCGGATACTCTCTATCTGTGATGATTGGGAGTCAGCTTGCTGGGCAATGGCAAAGTCTTGGCTTGATGCTCAGGTTGATTTACATTTAACTAGATTTCAACAAGGCAGAAATGCAGAAAGGCACTATGGTGATGACTCTGTTGGGATTTCATCCCATGAAACTTCAGCTGGTCCAGAAACTTGGCCTGAACATATTCTTGATCAACAACCACGGGATATCCCTAGTCTACTTCAAAAATTACATTCAGTTGAGGTTGTTCATGAAGCTGTGTCAAGAGCATGCAAAGAACATCATCGTCAAATTGAGATGAATCTCATGCTTTGTAATATACCTCATCTCCTGGACCTTATATGGACATGGATTTCACCATCTGAGGATGAGCACAATGGCTTACGCCCCCATGGTGATCCTCAACTAATGCGCTTTGGAGCCCATTTATCTCTTCTTCTTAGATATCTTCTTGATGATGAAATGAAGGATTCCTTCAAGGAGAAACTTGCAACAGTTGGAGATAACATTCTTCAGATGTATGTAATGTACTTATTCTCGGAGCATCATGAAGAACTTGTTGGCTTATATGCTTCTCAAATAAGTCGTCACTATTGCATCGATCTGTTTGTGGAAATGATGGAGTTAAGGTCCAATAGCAGCATACAAGTCAAACGTAAACTCTTCCAATCAGCAATGTCGTATTTGCCTTTCTCTTTTGAAGACGAAATGAAGGCAAGCTTTGAAGACATTATTGAAAGAGTCCTCTCAAGATCTCGAGAAATGAAAGATAGTAAATATGATGAAAAGCCTTCAGATGTTGCTGAACAGCATCTATTGCAATCTTTACAAAAGGCTACGGCAATACAATGGCTTTGTTTTACTCCTCCTGCTATTAGTGATTTTGAGTCCATCAGGGCAAAGCTTCTCATTAAATCATTGATTCATAGCAATATCCTATTTCGAGAATTTGCCTTAATTTCTATGTGGAGAATTCCTAAGATGCCAAAAGGAGCGCACATGCTACTCAGTTTTCTTGCCGAGCCTTTGAAGCAACCCAAAGATATAGTTCTATCTTTTGATGACTATAACGTTTCAGAGAATTTTTGTGAATTTGAAGATTGGAGGGAATATTTCTCTTGTGATGCATCTTATCGGAGGTGGCTTAAAAATAAATGTGAAAATGCGGCTGTTTCTCCTGCCAATCTTTCTTCAGAAGAAAAGGAGAGTGCCATTGCTGCTGCAAGTGAAACTATTAATTCTTCCCTGTCATTGCTATTCAGAGAAGGACCTCCATGGTTAAATGCAATTGAGAGTTGCTCTCTTGAGTCAACCAGTGGCATTTATCTTGACTTGAATGCTTGTGCAATGCTGTGCCTACCTTCCGGTGAATGCTTGTGCCCCGATGCAACTTTGTGCACGACTTTGACGAGTGCGTTATTCTCTTCAGTCAGTGAAGAAGAAGGGCTACAACGGCAATTAATGGTCAACGTTTCTATCTCACTCACAAATAGCTACTGTGTTGAAATTTCCCTTCGTTGCTTAGCCACACAAGGTGATGGGTTTGGACTTCATGAATCTAATGATGGCGGTCTCCTGGCCACTGTCATGGCTTCTGGATTCAAAGGCGAGCTTAAGCGTTTTCAGCCTGGAATCACGTTAGAGATATCCCGGATTGATGCTTGGTATTCGGATAGTGATGGTTCTCTCCAAATCCCAGCTGCCCATGTGGTTAAAGGACTTTGTCGAAAATGTTGCTTGCCGGAAATCATTCTACGTTGCATGGAGGTTTCGGTTTCACTTGCTGAATCACAAGAAACAAATATTCATCATGATGATTTAGTGGAATTGGTTGCTTCTCCAATGATGACATTGTTTAGCCAGGAACAGCTGCAGGTTTGTGGTTGCCTTACATTTGCTGTGTAG

Network for GWHGAAEX014291

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04121.12	Nup84_Nup100	222	854	4.90E-63

Protein Sequence

>GWHPAAEX014291
MEADMDTSQTYVNAEDLNNREQFRRYGKRLSASRTSPFGNSVSSARLLHEGNNIQKRPNAALLLDEIKQEVESYDIDGLEQITSNAKYSLKRQESDDGLGLSELRTSHNLVHNQPIKLLKQEDDLLVDGGESAFSIFATRMDSALQGLISFPDLILQFESTCRSVSELIRYSISLGGRHRVVEDKFLQQKAKFLLDEAASWSLLWYLFGKGNLSLSIFLCPSTSHQEACQFVMTNLMAQFCIRIVLWLQGLAAKALELEKKFKGCYVGSYLPSSGVWLHTQRFLKRKINNHSTVHHLDFDAPTREKAKIHADDMKQDEAILEDVWILLRAGHTEEACKLCYSAGQPWRASTLCPFGGLDLLPSLEAVVKNGKPRSLQSIEQESGIAHQMRLWKWACYCASEKLAKQDGGKYEMAVYAVQCSNMKRILSICDDWESACWAMAKSWLDAQVDLHLTRFQQGRNAERHYGDDSVGISSHETSAGPETWPEHILDQQPRDIPSLLQKLHSVEVVHEAVSRACKEHHRQIEMNLMLCNIPHLLDLIWTWISPSEDEHNGLRPHGDPQLMRFGAHLSLLLRYLLDDEMKDSFKEKLATVGDNILQMYVMYLFSEHHEELVGLYASQISRHYCIDLFVEMMELRSNSSIQVKRKLFQSAMSYLPFSFEDEMKASFEDIIERVLSRSREMKDSKYDEKPSDVAEQHLLQSLQKATAIQWLCFTPPAISDFESIRAKLLIKSLIHSNILFREFALISMWRIPKMPKGAHMLLSFLAEPLKQPKDIVLSFDDYNVSENFCEFEDWREYFSCDASYRRWLKNKCENAAVSPANLSSEEKESAIAAASETINSSLSLLFREGPPWLNAIESCSLESTSGIYLDLNACAMLCLPSGECLCPDATLCTTLTSALFSSVSEEEGLQRQLMVNVSISLTNSYCVEISLRCLATQGDGFGLHESNDGGLLATVMASGFKGELKRFQPGITLEISRIDAWYSDSDGSLQIPAAHVVKGLCRKCCLPEIILRCMEVSVSLAESQETNIHHDDLVELVASPMMTLFSQEQLQVCGCLTFAV

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14301	NUP107, NUP84	RNA transport	map03013

Gene Ontology

GO term	Ontology	Name
GO:0017056	Molecular Function	structural constituent of nuclear pore
GO:0005643	Cellular Component	nuclear pore

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	26.900
SRP064423	SRR2545915	Juvenile tuber	21.180
SRP108465	SRR5643513	five period of Gastrodia elata	10.090
	SRR5643514	five period of Gastrodia elata	11.570
	SRR5643515	five period of Gastrodia elata	9.500
	SRR5643524	five period of Gastrodia elata	9.300
	SRR5643525	five period of Gastrodia elata	8.620
	SRR5643528	five period of Gastrodia elata	7.710
	SRR5643658	five period of Gastrodia elata	9.960
	SRR5643659	five period of Gastrodia elata	9.260
	SRR5643660	five period of Gastrodia elata	11.570
	SRR5643661	five period of Gastrodia elata	9.960
	SRR5643662	five period of Gastrodia elata	9.500
	SRR5643663	five period of Gastrodia elata	11.250
	SRR5643664	five period of Gastrodia elata	9.610
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	15.790
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	11.260
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	17.470
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	17.480
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	18.630
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	20.820
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	19.950
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	20.330
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	17.320
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	18.260
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	13.810
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	13.810
SRP279888	Gastro	Gastrodia elata tuber	12.91
	Juven	Juvenile tuber	13.53
	Mother_Gastro	Mother tuber of Gastrodia elata	6.55
	Mother_Juven	Mother tuber of Juvenile	9.80