Detail information of GWHGAAEX014296/evm.TU.scaffold_59.42
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|221632107|ref|YP_002521328.1| | 6.00E-72 | putative fructokinase [Thermomicrobium roseum DSM 5159] |
| KOG | KOG2855 | 2.00E-135 | Ribokinase |
| nr | gi|475536281|gb|EMT08894.1| | 1.32E-147 | hypothetical protein F775_32009 [Aegilops tauschii] |
| Swissprot | tr|Q0J8G4|SCRK2_ORYSJ | 1.00E-149 | Fructokinase-2 |
| trEMBL | tr|W5HXV0|W5HXV0_WHEAT | 5.00E-148 | Uncharacterized protein {ECO:0000313|EnsemblPlants:Traes_7DL_1A847FDCC.1} |
| TAIR | AT4G10260 | 2.00E-135 | pfkB-like carbohydrate kinase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000068 | 987056 | 1000558 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX014296
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module3 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00112.22 | Peptidase_C1 | 21 | 134 | 2.40E-27 |
| PF00294.23 | PfkB | 137 | 390 | 4.40E-56 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006508 | Biological Process | proteolysis |
| GO:0016773 | Molecular Function | phosphotransferase activity, alcohol group as acceptor |
| GO:0008234 | Molecular Function | cysteine-type peptidase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 4.550 |
| SRR2545915 | Juvenile tuber | 5.310 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 2.760 |
| SRR5643514 | five period of Gastrodia elata | 3.530 | |
| SRR5643515 | five period of Gastrodia elata | 3.250 | |
| SRR5643524 | five period of Gastrodia elata | 2.660 | |
| SRR5643525 | five period of Gastrodia elata | 2.670 | |
| SRR5643528 | five period of Gastrodia elata | 3.750 | |
| SRR5643658 | five period of Gastrodia elata | 4.230 | |
| SRR5643659 | five period of Gastrodia elata | 145.320 | |
| SRR5643660 | five period of Gastrodia elata | 2.960 | |
| SRR5643661 | five period of Gastrodia elata | 3.010 | |
| SRR5643662 | five period of Gastrodia elata | 133.450 | |
| SRR5643663 | five period of Gastrodia elata | 141.040 | |
| SRR5643664 | five period of Gastrodia elata | 146.700 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 2.670 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 2.010 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 3.130 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 3.520 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 4.440 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 2.680 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 3.830 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 2.990 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 4.700 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 6.650 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 3.040 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 3.040 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 3.66 |
| Juven | Juvenile tuber | 1.32 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 4.63 | |
| Mother_Juven | Mother tuber of Juvenile | 2.45 |