Detail information of GWHGAAEX014300/evm.TU.scaffold_59.47


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|511059916|ref|YP_008071801.1|2.00E-82phenylalanyl-tRNA ligase subunit beta [Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1]
KOGKOG24720Phenylalanyl-tRNA synthetase beta subunit
nrgi|743870593|ref|XP_010906084.1|0PREDICTED: probable phenylalanine--tRNA ligase beta subunit [Elaeis guineensis]
Swissprottr|Q9SGE9|SYFB_ARATH0Probable phenylalanine--tRNA ligase beta subunit
trEMBLtr|M0S295|M0S295_MUSAM0Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr1P22870_001}
TAIRAT1G725500tRNA synthetase beta subunit family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000006810260731069367-
Transcript Sequence

Network for GWHGAAEX014300

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03483.16B3_41212815.40E-27
PF03484.14B53243924.30E-14
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01890FARSB, pheT Aminoacyl-tRNA biosynthesis map00970

Gene Ontology

GO term OntologyName
GO:0006432Biological Processphenylalanyl-tRNA aminoacylation
GO:0003723Molecular FunctionRNA binding
GO:0000287Molecular Functionmagnesium ion binding
GO:0000166Molecular Functionnucleotide binding
GO:0004826Molecular Functionphenylalanine-tRNA ligase activity
GO:0005524Molecular FunctionATP binding
GO:0005737Cellular Componentcytoplasm

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms49.850
SRR2545915Juvenile tuber54.410
SRP108465SRR5643513five period of Gastrodia elata32.140
SRR5643514five period of Gastrodia elata34.740
SRR5643515five period of Gastrodia elata32.060
SRR5643524five period of Gastrodia elata37.050
SRR5643525five period of Gastrodia elata30.160
SRR5643528five period of Gastrodia elata29.000
SRR5643658five period of Gastrodia elata30.630
SRR5643659five period of Gastrodia elata29.540
SRR5643660five period of Gastrodia elata32.260
SRR5643661five period of Gastrodia elata30.090
SRR5643662five period of Gastrodia elata25.900
SRR5643663five period of Gastrodia elata34.550
SRR5643664five period of Gastrodia elata26.350
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_140.090
SRR6049655Rhizomagastrodiae_C368-T10_good_151.810
SRR6049656Rhizomagastrodiae_C368-T07_good_147.170
SRR6049657Rhizomagastrodiae_C368-T07_good_144.470
SRR6049658Rhizomagastrodiae_C368-T04_good_144.430
SRR6049659Rhizomagastrodiae_C368-T04_good_150.470
SRR6049660Rhizomagastrodiae_C368-T01_good_146.160
SRR6049661Rhizomagastrodiae_C368-T04_good_142.390
SRR6049662Rhizomagastrodiae_C368-T01_good_149.080
SRR6049663Rhizomagastrodiae_C368-T01_good_146.700
SRR6049664Rhizomagastrodiae_C368-T10_good_150.320
SRR6049665Rhizomagastrodiae_C368-T10_good_150.320
SRP279888GastroGastrodia elata tuber 38.57
JuvenJuvenile tuber32.72
Mother_GastroMother tuber of Gastrodia elata 38.09
Mother_JuvenMother tuber of Juvenile 36.13