Detail information of GWHGAAEX014302/evm.TU.scaffold_59.49
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG1439 | 0 | RAB proteins geranylgeranyltransferase component A (RAB escort protein) |
| nr | gi|672129562|ref|XP_008788293.1| | 0 | PREDICTED: guanosine nucleotide diphosphate dissociation inhibitor 2 [Phoenix dactylifera] |
| Swissprot | tr|O24653|GDI2_ARATH | 0 | Guanosine nucleotide diphosphate dissociation inhibitor 2 |
| trEMBL | tr|A0A061EQL3|A0A061EQL3_THECC | 0 | Guanosine nucleotide diphosphate dissociation inhibitor 1 isoform 1 {ECO:0000313|EMBL:EOY06963.1} |
| TAIR | AT3G59920 | 0 | RAB GDP dissociation inhibitor 2 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000068 | 1090488 | 1114515 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX014302
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00996.17 | GDI | 1 | 433 | 8.20E-227 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0007264 | Biological Process | small GTPase mediated signal transduction |
| GO:0015031 | Biological Process | protein transport |
| GO:0005092 | Molecular Function | GDP-dissociation inhibitor activity |
| GO:0005093 | Molecular Function | Rab GDP-dissociation inhibitor activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 136.610 |
| SRR2545915 | Juvenile tuber | 201.310 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 157.640 |
| SRR5643514 | five period of Gastrodia elata | 185.350 | |
| SRR5643515 | five period of Gastrodia elata | 160.870 | |
| SRR5643524 | five period of Gastrodia elata | 183.760 | |
| SRR5643525 | five period of Gastrodia elata | 188.590 | |
| SRR5643528 | five period of Gastrodia elata | 242.450 | |
| SRR5643658 | five period of Gastrodia elata | 207.050 | |
| SRR5643659 | five period of Gastrodia elata | 144.150 | |
| SRR5643660 | five period of Gastrodia elata | 129.640 | |
| SRR5643661 | five period of Gastrodia elata | 136.980 | |
| SRR5643662 | five period of Gastrodia elata | 123.690 | |
| SRR5643663 | five period of Gastrodia elata | 126.090 | |
| SRR5643664 | five period of Gastrodia elata | 120.950 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 191.400 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 205.170 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 187.980 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 198.450 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 245.230 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 269.650 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 203.260 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 213.950 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 185.630 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 198.070 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 215.480 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 215.480 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 252.70 |
| Juven | Juvenile tuber | 338.84 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 315.03 | |
| Mother_Juven | Mother tuber of Juvenile | 421.99 |