Detail information of GWHGAAEX014311/evm.TU.scaffold_59.62


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG13273.00E-37Copine
nrgi|672110727|ref|XP_008797006.1|6.59E-48PREDICTED: E3 ubiquitin-protein ligase RGLG2-like [Phoenix dactylifera]
Swissprottr|Q9SS90|RGLG1_ARATH8.00E-38E3 ubiquitin-protein ligase RGLG1
trEMBLtr|M0TLN2|M0TLN2_MUSAM2.00E-47Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr8P01300_001}
TAIRAT3G016503.00E-37RING domain ligase1

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000006812211301222164-
Transcript Sequence

Network for GWHGAAEX014311

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module4

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13920.5zf-C3HC4_3921323.10E-08
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms95.320
SRR2545915Juvenile tuber136.730
SRP108465SRR5643513five period of Gastrodia elata37.440
SRR5643514five period of Gastrodia elata26.800
SRR5643515five period of Gastrodia elata107.800
SRR5643524five period of Gastrodia elata41.430
SRR5643525five period of Gastrodia elata209.480
SRR5643528five period of Gastrodia elata521.030
SRR5643658five period of Gastrodia elata251.950
SRR5643659five period of Gastrodia elata115.090
SRR5643660five period of Gastrodia elata62.450
SRR5643661five period of Gastrodia elata111.800
SRR5643662five period of Gastrodia elata122.370
SRR5643663five period of Gastrodia elata79.960
SRR5643664five period of Gastrodia elata189.620
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_176.970
SRR6049655Rhizomagastrodiae_C368-T10_good_161.420
SRR6049656Rhizomagastrodiae_C368-T07_good_163.330
SRR6049657Rhizomagastrodiae_C368-T07_good_180.380
SRR6049658Rhizomagastrodiae_C368-T04_good_173.370
SRR6049659Rhizomagastrodiae_C368-T04_good_176.420
SRR6049660Rhizomagastrodiae_C368-T01_good_1116.450
SRR6049661Rhizomagastrodiae_C368-T04_good_160.090
SRR6049662Rhizomagastrodiae_C368-T01_good_153.680
SRR6049663Rhizomagastrodiae_C368-T01_good_1101.920
SRR6049664Rhizomagastrodiae_C368-T10_good_141.080
SRR6049665Rhizomagastrodiae_C368-T10_good_141.080
SRP279888GastroGastrodia elata tuber 67.86
JuvenJuvenile tuber17.93
Mother_GastroMother tuber of Gastrodia elata 769.58
Mother_JuvenMother tuber of Juvenile 199.27