Detail information of GWHGAAEX014314/evm.TU.scaffold_59.65
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|379733579|ref|YP_005327084.1| | 2.00E-06 | putative rhomboid protease [Blastococcus saxobsidens DD2] |
| KOG | KOG2632 | 4.00E-117 | Rhomboid family proteins |
| nr | gi|727694705|gb|AIY60703.1| | 5.82E-152 | rhomboid protein Aspof_RBL14, partial [Asparagus officinalis] |
| Swissprot | tr|Q8RXW0|Y3761_ARATH | 1.00E-124 | Uncharacterized protein At3g17611 |
| trEMBL | tr|A0A067DVL8|A0A067DVL8_CITSI | 3.00E-144 | Uncharacterized protein {ECO:0000313|EMBL:KDO46873.1} |
| TAIR | AT3G17610_2 | 4.00E-117 | Unannotated protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000068 | 1233518 | 1247663 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX014314
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module1 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01694.21 | Rhomboid | 72 | 221 | 1.20E-21 |
| PF00641.17 | zf-RanBP | 273 | 293 | 2.50E-06 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0004252 | Molecular Function | serine-type endopeptidase activity |
| GO:0016021 | Cellular Component | integral component of membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 6.180 |
| SRR2545915 | Juvenile tuber | 39.780 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 3.840 |
| SRR5643514 | five period of Gastrodia elata | 4.940 | |
| SRR5643515 | five period of Gastrodia elata | 5.660 | |
| SRR5643524 | five period of Gastrodia elata | 4.860 | |
| SRR5643525 | five period of Gastrodia elata | 20.040 | |
| SRR5643528 | five period of Gastrodia elata | 28.560 | |
| SRR5643658 | five period of Gastrodia elata | 10.590 | |
| SRR5643659 | five period of Gastrodia elata | 8.130 | |
| SRR5643660 | five period of Gastrodia elata | 8.140 | |
| SRR5643661 | five period of Gastrodia elata | 8.590 | |
| SRR5643662 | five period of Gastrodia elata | 9.470 | |
| SRR5643663 | five period of Gastrodia elata | 8.530 | |
| SRR5643664 | five period of Gastrodia elata | 9.370 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 4.090 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 4.400 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 4.530 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 3.090 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 4.370 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 4.060 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 3.800 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 4.510 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 4.490 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 5.010 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 4.810 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 4.810 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 6.87 |
| Juven | Juvenile tuber | 3.67 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 17.18 | |
| Mother_Juven | Mother tuber of Juvenile | 8.93 |