Detail information of GWHGAAEX014315/evm.TU.scaffold_59.66


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG26371.00E-82Uncharacterized conserved protein
nrgi|672161003|ref|XP_008800299.1|0PREDICTED: LOW QUALITY PROTEIN: protein LTV1 homolog [Phoenix dactylifera]
trEMBLtr|W9RQV0|W9RQV0_9ROSA2.00E-139Uncharacterized protein {ECO:0000313|EMBL:EXC04216.1}
TAIRAT3G499901.00E-82Unannotated protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000006812545961282905-
Transcript Sequence

Network for GWHGAAEX014315

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04180.13LTV105071.90E-07
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0042274Biological Processribosomal small subunit biogenesis

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms25.740
SRR2545915Juvenile tuber26.080
SRP108465SRR5643513five period of Gastrodia elata32.060
SRR5643514five period of Gastrodia elata28.770
SRR5643515five period of Gastrodia elata38.300
SRR5643524five period of Gastrodia elata30.990
SRR5643525five period of Gastrodia elata26.220
SRR5643528five period of Gastrodia elata35.330
SRR5643658five period of Gastrodia elata23.950
SRR5643659five period of Gastrodia elata30.810
SRR5643660five period of Gastrodia elata30.570
SRR5643661five period of Gastrodia elata28.240
SRR5643662five period of Gastrodia elata31.410
SRR5643663five period of Gastrodia elata28.620
SRR5643664five period of Gastrodia elata25.730
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_147.330
SRR6049655Rhizomagastrodiae_C368-T10_good_132.160
SRR6049656Rhizomagastrodiae_C368-T07_good_135.120
SRR6049657Rhizomagastrodiae_C368-T07_good_146.550
SRR6049658Rhizomagastrodiae_C368-T04_good_126.720
SRR6049659Rhizomagastrodiae_C368-T04_good_136.830
SRR6049660Rhizomagastrodiae_C368-T01_good_136.600
SRR6049661Rhizomagastrodiae_C368-T04_good_128.180
SRR6049662Rhizomagastrodiae_C368-T01_good_129.480
SRR6049663Rhizomagastrodiae_C368-T01_good_129.760
SRR6049664Rhizomagastrodiae_C368-T10_good_140.130
SRR6049665Rhizomagastrodiae_C368-T10_good_140.130
SRP279888GastroGastrodia elata tuber 24.84
JuvenJuvenile tuber40.72
Mother_GastroMother tuber of Gastrodia elata 32.73
Mother_JuvenMother tuber of Juvenile 49.26