Detail information of GWHGAAEX014330/evm.TU.scaffold_59.84
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|390944042|ref|YP_006407803.1| | 1.00E-55 | pectin methylesterase [Belliella baltica DSM 15883] |
| nr | gi|743763243|ref|XP_010911792.1| | 0 | PREDICTED: probable pectinesterase/pectinesterase inhibitor 51 [Elaeis guineensis] |
| Swissprot | tr|Q9LXD9|PME51_ARATH | 0 | Pectinesterase 51 (Precursor) |
| trEMBL | tr|M0RFC9|M0RFC9_MUSAM | 0 | Pectinesterase {ECO:0000256|RuleBase:RU000589} |
| TAIR | AT5G09760 | 0 | Plant invertase/pectin methylesterase inhibitor superfamily |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000068 | 1520379 | 1524397 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX014330
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module1 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF04043.14 | PMEI | 29 | 157 | 1.90E-09 |
| PF01095.18 | Pectinesterase | 219 | 522 | 7.40E-107 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0042545 | Biological Process | cell wall modification |
| GO:0030599 | Molecular Function | pectinesterase activity |
| GO:0004857 | Molecular Function | enzyme inhibitor activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 2.430 |
| SRR2545915 | Juvenile tuber | 1.500 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 12.110 |
| SRR5643514 | five period of Gastrodia elata | 10.890 | |
| SRR5643515 | five period of Gastrodia elata | 10.720 | |
| SRR5643524 | five period of Gastrodia elata | 8.190 | |
| SRR5643525 | five period of Gastrodia elata | 71.070 | |
| SRR5643528 | five period of Gastrodia elata | 41.470 | |
| SRR5643658 | five period of Gastrodia elata | 55.010 | |
| SRR5643659 | five period of Gastrodia elata | 3.020 | |
| SRR5643660 | five period of Gastrodia elata | 2.760 | |
| SRR5643661 | five period of Gastrodia elata | 1.830 | |
| SRR5643662 | five period of Gastrodia elata | 4.940 | |
| SRR5643663 | five period of Gastrodia elata | 5.790 | |
| SRR5643664 | five period of Gastrodia elata | 20.640 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 28.380 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 30.550 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 30.490 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 24.430 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 28.390 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 23.560 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 33.910 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 30.200 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 54.610 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 33.400 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 30.440 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 30.440 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 9.26 |
| Juven | Juvenile tuber | 1.53 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 19.07 | |
| Mother_Juven | Mother tuber of Juvenile | 10.13 |