Gene detail

Detail information of GWHGAAEX014335/evm.TU.scaffold_59.89

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG1609	3.00E-21	Protein involved in mRNA turnover and stability
nr	gi\|695058852\|ref\|XP_009417755.1\|	2.54E-25	PREDICTED: uncharacterized protein LOC103998088 [Musa acuminata subsp. malaccensis]
Swissprot	tr\|F4JKK0\|SUD1_ARATH	7.00E-07	Probable E3 ubiquitin ligase SUD1
trEMBL	tr\|M0U0W6\|M0U0W6_MUSAM	9.00E-26	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr9P16590_001}
TAIR	AT1G02610	3.00E-21	RING/FYVE/PHD zinc finger superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000068	1539735	1541389	+

Transcript Sequence
>GWHTAAEX014335 CAATAATCAACAAACTATTTTTCTCTTTTACAAAACTACCACCAAACTTTATTTGAAGTGGAGACAATTAAAATTTTCTATGTAAAATAAAAAAGTTAAATTTCCCCCAAGTTAAATGCAGCGCTCCAAATGCCAATCCCCAGGCACTTAGTCGAAGCGGCCGGAGACTAGATCCGGTCCAAACTGCCGGCAACTGTCCAAAAAAAACCGAACAACAAAGCCGACTTATAAACGCCAACCATCTCTTCCTCCTCTCTTTTAAACACGAAGAAGAGCAGAGAGGAACGGAGAAGGATGGAACTTTCAAATATTGAGCAGAATAATTCTTTCCTTTCTTCTTCTTCTTCTTCATCCTATTTGAAATGCCTATATAGAATATGCCATGAGGAGGAAGAAGAGGGAACCACAAGTATGGAATCCCCCTGCGCTTGTTCTGGAACTCTCAAGTTTGCGCACAGAGGATGCATACAAAGGTGGTGTGATGAGAAGGGCGGCACAATCTGTGAAATTTGTCTTGAAGTTAGAGTCAGTTTAAGAAACAATTTTTTTTTTTTTACTCACAGTAATATTGCTTTTGAGCACCTGCTCATTCGGTTCTCGCCTTCAAACAAGGTACACTGCTTTACTTGATTGATACCTTCCAAATATCAGCCTCTGTTTCAAATTCTGAATAATTTTTGAACTGCCTTCAAACAAGCTATATAGCTGTGCTTCAATGTCGAAGGACTTGTAGAACTTAGAGGATTTCAGGTACATTTTTCTTGAAGTTTTGCCTAGATGGTTTAAGATGACTAGAAAGGAATTTATTATAATAGCCATAGTATGAGGAGTAGCTACACTACTATATGAATTTAAAAGGCTCCTCGTAGTCATAGTCCTACTTAGTCCTGTCTTAATAAGGTCCAATGTCTGAAACTCTATGTCAACAACTCCCTCTCTCTCCAATCACTATAAACATGCAATCTCTTGAGCTCTTACCATGACCTCTTAATTATCTCAATTTCTGTTATGTGGTGGAACTTTAAGTGTTTTGAAATTTTTTGGAAAAGTTAAGGATTGATCAAAAGTGAACGGGATGCAAATTGGATTGAAAATGAGCTTGATGAGCACTGGGCATGCCCAAGCACTTGGAGGAAGTATGACTAGACATAGGTCTGGGCCCAGGCGCCGTGTCAACCAAAGTCAACAGAGGCATGGACGCCAAGCACCCTGTTACAGTAAGTAAGCTCGTGGGGCTAGCACCTAGGCACATCCTGGAGTCAGGCGAAGTGTGAAGTTATGTCTAAGCATTAAACTCAGTCTATTTGGGGAACCCTAGGGTTTCTTTGTGCTGGATATAAATATCCTAACTATTTAGAATTAATGGGTGTAATGTTAACGCACTCAAAAAATGGTGGCTGCTGTGGCTGTGTGGAGTCTCCTTCCCTAAGAGAAAACCTTGATTGTTGAGGCGGCTATTGCAAGTCATGTATCCTTCTTCTTAATTCATAGTGAAATTGTATTGTGGTAATGGCTTCATAATTTTTTTCCTGTAAAGAATTTTTTACATACAATCTGTA

Network for GWHGAAEX014335

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module2

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12906.6	RINGv	27	73	1.10E-12

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0008270	Molecular Function	zinc ion binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	0.560
SRP064423	SRR2545915	Juvenile tuber	0.080
SRP108465	SRR5643513	five period of Gastrodia elata	1.240
	SRR5643514	five period of Gastrodia elata	2.390
	SRR5643515	five period of Gastrodia elata	0.660
	SRR5643524	five period of Gastrodia elata	2.190
	SRR5643525	five period of Gastrodia elata	0.100
	SRR5643528	five period of Gastrodia elata	0.160
	SRR5643658	five period of Gastrodia elata	0.310
	SRR5643659	five period of Gastrodia elata	0.000
	SRR5643660	five period of Gastrodia elata	0.000
	SRR5643661	five period of Gastrodia elata	0.060
	SRR5643662	five period of Gastrodia elata	0.230
	SRR5643663	five period of Gastrodia elata	0.000
	SRR5643664	five period of Gastrodia elata	0.000
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	2.700
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	5.550
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	2.160
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	1.040
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	0.970
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	0.830
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	0.760
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	0.610
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	0.760
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	0.830
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	4.990
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	4.990
SRP279888	Gastro	Gastrodia elata tuber	0.09
	Juven	Juvenile tuber	0.21
	Mother_Gastro	Mother tuber of Gastrodia elata	0.87
	Mother_Juven	Mother tuber of Juvenile	0.50