Gene detail

Detail information of GWHGAAEX014338/evm.TU.scaffold_59.91

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|226533486\|ref\|NP_001147855.1\|	1.64E-165	protein binding protein [Zea mays]
trEMBL	tr\|B6SVM4\|B6SVM4_MAIZE	6.00E-166	Protein binding protein {ECO:0000313\|EMBL:ACG28907.1}
TAIR	AT2G22680	4.00E-105	Zinc finger (C3HC4-type RING finger) family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000068	1658996	1661830	-

Transcript Sequence
>GWHTAAEX014338 GTCACTTTCCATTTCCTCCTGCCCTTTCACTTTCCAGCCGCTGTTCACGAATATAAATGCGCTCACATAATTTGAAGGGTTTGCGGCCTCAAAGTAAGAAAATTAAGAACCCAAATTTGCAAATTAGCCAAATTTTATTTTATATGCCTGCTTCCCATTTGCGAGAGAACCCAAGTCGAAAGAGGGAGAGAGAATGGGAACTGGATGGCGGAGAGCCTTCTGTACATCCATTCCTCGAGATCCAGAAACCGCAGCTCCGCCGGAAAAGCAGCAAAATCCAACCTTGTTTCGCCTGCGCTGTAGAGCCGCCGGCACTTCGTCGGAGAATCCTCCGCTTTCCCCTGCATTGAACGAAAGCACCACCCTGCACTGCAAAGGCGGTGGCTTTACGCCGACGCTGGCTTCTTCTGCGGGGCTGCTCAAAGGAAGCCCGAGGCTTCTTCTAACGCGATCCAACCCCGCATCTCCTCGATCTCCCTCCAGATTCGCCCAGCTCAAGGCCACACTCCGCCTCTCTCGGAGTCGGTGTGGAATATGCTCGCAGAGTGTGAGAACGGGACAAAGAACGGCCGTCTTTACTGCGGAGTGCTCCCATTCCTTCCATTTTCCCTGCATCTCCACCCATGTCCGAAGTCAGAGCAGAGATCCGACTGGACGTCTCTCCTGCCCTGTGTGCTCTGCTTCATGGCGCGAGGTCCCTCTGCTATCCTCTTCTTCGCTTCACCCAGCGCCAACCCCTCCTGCAGCCAAGCCCAGGATCTACGATGACGATGAGCCTCTGCAGCTCTCTTCCAGCGCATGCCAACCACCTCTTCATTTCAATCCTATTCCAGAGTCCGATTTCGAGGACGAGGCCGATGGCGGAGGATCGATCAGGGATGAATCCAACGGCTGCGGCGTGGAAGTAGCTGCCTTGCCGGAAACCGCTATTCTCTCCTCGGATCGTAACTACCAAAGCTATGCTGTTTTATTGAGAGTGGAAGCACCGTCTCTCCCCCAGCGCTCTGTTTCCAAAATGGCTGCTTCCGTGCTGGATCCATCCTGCCGCGCCCCTATAGATCTTGTGACAGTTCTGGATGTGAGCGAGAGCATGACGGATGCGAAGCTTCAGCTGCTGAAGAGGGCGATGCGCCTTCTAATCTCCTCCTTGGGATCCTCAGACCGGCTTTCCATAGTCGCCTTCTCCGCCGGCGCCAAGAGGCTGCTTCCTCTGCTCAGGATGTCGCGGCAGGGGCAGCGCTCTGCGCGTCAGATTGTCGACCGACTCATCCTCTGCGGCGGCGGCACCCAGAGCGATTGCCGCCGATTCATCGACCTCGCTCTGCGCAAGGCCTCCAAGGTGCTTGAGGACAGGAGGGAGCGCAACACGGTGGCCACCATCATGCTCCTCTCCGACAGTCATCAGGAGAGAGAGAAGCTTTATCATCCGACAATCCGCACTCCAATTCCCCCATCCACTGAAGCCACGCGCTTCGCCCATCTGGAAATTCCCATTGATGGCTCCGGCAGTGGCTGCGGCGGAGTGGAAGATGTATTTTCGAAGTGTGTGAGCGGGCTGGTGAGCGTGGTGCTGCAAGATGTTCATCTCCACCTCTGCTTTCCATCCGGCTTCATTTCCGCCGTTTATTCCTGCGGCAGCGGGGAATGGACGGAAGGATGCGTCGGGCACCCCCTGTCGAAGGGAGAAGGGAGCGGCGGCGTCTCTGTCAGCTTGGGAGATTTCTACGCGGATGAAAGGCGAGAGCTTTTGGTAGAATTGAAACTGCCTTTGCAGCAAAGGCGCGGCCTTTCGTCGTACAAATGCTGCTATCGAGATCCGACGAGCAGGGAGCTAGTTGTTTGCGGGGAGAAGCCTCTGTCTTTGCCGACGCTGCGGCCGATTTCTGCCAGCTGCGTCGAGCTGCGGGGCTTATTTGTTGCTGTGAGGGCTCTGGTGGAATCGCGCCGTCTGGAGGAGCAGAACGAACTGGATGCGGCGGCGCAGATTCTCTCCGCCGCTCGATCGGCGCTGATGATGCAATCGAACGGTGGAGATCAGGTTCGGAAGCGAGTCGCAAGCATAGAGATGAGGCTGTCGGAGCTGCAGAGGCGGCGACGGAGGCAGCACGCGGTGGCTTCTGAGCTGACGCCGACATCGGCTTGGCGCGCCGCAGAGCAGCTGGCCAAAGTGGCTATTTTAAGAAAGTCAATGAGCCGTGTCGGCGATTTGCATGGGTTCGAGAATGCTCGCTTCTAGCTAGCCTCGGGTACAGGGATAGGCAGGAGGTGAAGCTTTTTTTTTTTCCTGCTTTTTTTGTTTTTTGTTTTATTTTTGTCAAAATTTCATTGCAGCTCTAAATTAAATTAAGCTATATATTTGTATGCAGTGGTCGTTTCTTTTAATTATGGGAAAGTTGAACAGTGCGTATCAAACCCAATCATTTCTGCATTATTTTTTTCCTTTGTTTTTCTTATGATTGGAATGTATTCTTTGATGAAAAGTAAGCTATTTTCTCTTAAATTATACCTCAATTTCTT

Network for GWHGAAEX014338

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module1

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF17123.4	zf-RING_11	112	141	3.10E-08
PF13519.5	VWA_2	290	402	8.60E-13

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	RING

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	12.680
SRP064423	SRR2545915	Juvenile tuber	32.950
SRP108465	SRR5643513	five period of Gastrodia elata	42.470
	SRR5643514	five period of Gastrodia elata	25.960
	SRR5643515	five period of Gastrodia elata	32.130
	SRR5643524	five period of Gastrodia elata	22.660
	SRR5643525	five period of Gastrodia elata	7.040
	SRR5643528	five period of Gastrodia elata	3.510
	SRR5643658	five period of Gastrodia elata	3.470
	SRR5643659	five period of Gastrodia elata	69.090
	SRR5643660	five period of Gastrodia elata	78.480
	SRR5643661	five period of Gastrodia elata	84.370
	SRR5643662	five period of Gastrodia elata	73.860
	SRR5643663	five period of Gastrodia elata	65.840
	SRR5643664	five period of Gastrodia elata	57.840
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	26.770
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	27.390
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	38.790
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	21.860
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	28.270
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	18.350
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	24.610
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	34.640
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	28.360
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	21.030
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	27.830
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	27.830
SRP279888	Gastro	Gastrodia elata tuber	40.86
	Juven	Juvenile tuber	66.83
	Mother_Gastro	Mother tuber of Gastrodia elata	2.87
	Mother_Juven	Mother tuber of Juvenile	17.35