Gene detail

Detail information of GWHGAAEX014339/evm.TU.scaffold_59.92

Functional Annotation

Database	Orthologs	Annotation
COG	gi\|268316756\|ref\|YP_003290475.1\|	phosphoenolpyruvate carboxykinase [Rhodothermus marinus DSM 4252]
nr	gi\|695022892\|ref\|XP_009398590.1\|	PREDICTED: phosphoenolpyruvate carboxykinase [ATP]-like [Musa acuminata subsp. malaccensis]
Swissprot	tr\|Q9T074\|PCKA_ARATH	Phosphoenolpyruvate carboxykinase [ATP]
trEMBL	tr\|M0TRN4\|M0TRN4_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr8P18810_001}
TAIR	AT4G37870	phosphoenolpyruvate carboxykinase 1

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000068	1684331	1691927	-

Transcript Sequence
>GWHTAAEX014339 GCCGGATCAAATTTAGCAATATGAACGATTCTGTGTAGATTGTGTAAGCCACGTTTAACTGATCTTTAATCCTAATCCCTTGAATTTTGTGAAACGTGTATCTGATGCACAAAAATGTAAAAGAATAAAAAAAGCTGGGCTCCAGCTGACCGCCATCAGGGCGCCATGGCAGCCTTTAAAAGGGGCGCCTCGCCCCCCTCTTCTTCTTCATCCCGATTCTCGCACTTCATTCGTTTTGTTTGATGCTAATTTGAATCCCTTCTTCTTTTTCTTCTTCATCGTCGTCGTCCTGATCGGACATAGAGCAGGAACATTTGAGCTGAATGTCGGCGGAAATGGACACAAACATGGCTAATGGAAGCGCTCCCCCGCCTCGCCCAGGGGGGCTGCCAAAGATTCAGACCAAAATATCGCCAATGGCTGCAAGCATGTCATTCAAAGCAGAGAACAACATATGCCATGATGACAGCACTCCACCTGTAAAGGCTCAAACCATTGACGAGCTCCATTCCCTGCAGAAGAAGCGCTCTGCTCCGACCACACCCATCAATCTGGATGGCACCGTTCAGTTTCCCACTGCTTTCTCTACTATATCTGAAGAAGAGCGCCATAGGCTCCAACTCCAATCTATCAGTGCTTCGCTGGCATCTCTAACGAGGGAGACTGGTCCCAAGGTGGTGAAGGGAGACCCTAAAAGGAAGTTGGATACTCCAAAAGCACATCAACAGCAACATCACCCATTCACCCCAAACATCAATACCAGCGACAGTGCCTTGAAGCTAACTCATATCCTCTACAATCTCTCCCCTGCTGAGCTTTATGAACAAGCTATAAAGTGTGAGCACGGATCATTCATAACATCAAGCGGAGCTTTGGCAACATTATCCGGTGCAAAGACAGGCCGTTGCCCAAGAGACAAGAGGGTTGTTATGGATGAAACCACAGCAGATGAGCTCTGGTGGGGAAAGGGCTCCCCCAATATTGAGATGGATGAGCACACATTCTTAGTCAACAGAGAAAGAGCCGTTGACTACCTTAATTCCTTGGACAAGGTATTTGTGAACGACCAGTTCCTGAATTGGGACCCTGAAAATCGCATAAAAGTCAGGATCGTTTCTGCGAGAGCTTATCACTCCCTCTTCATGCGCAACATGTGCATTCGGCCTACAGTTGAAGAGCTTGAGAGTTTCGGGGAACCGGACTTCACCATATACAACGCGGGGCAATTCCCGTGCAATCGGTACACGCATTACATGACGTCGTCGACGAGCATAGACATAAATTTGGGAAGGAGGGAAATGGTGATTCTGGGCACGCAGTACGCCGGAGAGATGAAGAAGGGGCTGTTCAGCGTGATGCACTATCTGATGCCCAAGCGAGGCATCCTGTCCCTGCACTCTGGCTGCAACATGGGCACCGCCGGCGATGTCGCCCTCTTCTTCGGCCTCTCCGGCACGGGAAAGACGACCCTGTCGACGGACCAGAACCGGCTTCTGATCGGAGACGACGAGCACTGCTGGGGAGAGAACGGCGTGTCGAACATAGAGGGCGGGTGCTACGCCAAGTGCGTGGATCTGTCCTTCGAGAGAGAGCCGGACATTTTCAACGCCATAAAGTTCGGGACGGTGCTGGAGAACGTGGTGCTGGAGGAGCACACCCGGGTGGTGGACTACGGAGACCGGTCAGTGACGGAGAACACCCGCGCAGCGTACCCTATGGAGCACATCCCCAACGCGTGCATCCCCTGCGTGGGCCCCCACCCGCGCAACGTCATCCTTCTGGCCTGCGATGCCTTCGGAGTGCTCCCTCCCGTCAGCCGGCTGAGTCTGCCCCAGACAATGTACCACTTCGTCTCCGGCTACACCGCCCTGGTCGCCGGCACGGAGGACGGCGTACGGGAACCTCAGGCCACCTTCTCCGCCTGCTTCGGCGCCGCCTTCATAATGCTTCACCCTACAAGGTACGCCGCCATGCTCGCCGACAAGATGGCTCGCCACCGCGCCACCGGCTGGCTCGTCAACACCGGCTGGTCCGGCGGAAGATACGGCGTCGGCACCCGCATCAATCTCGCCTACACCAGGTCCATCATCAACGCCATACATTCCGGCGAACTCCTCAGTGCCGAATACGACACCACCGACGTCTTCGCCCTCCGCATCCCTACTGCCATCCCCGGAGTTCCCCCCCAGATACTCAATCCTGCCAATACTTGGGAAGACAAGAAGGTCTACAGGGAGACTCTGCTGAAGCTGGCGGGGCTCTTCAGACAGAATTTTGAAGTGTTTTCAAAGTACAAGATCGGCTCTGAAGACAGCCTCACGGAGGAGATTGCTGCTGCCGGCCCGAGCATATCCTGAGGAGCACCTTTCTTCTCCCATCTCTCTGCCTGGTGCGCTGCCTGGCGCTTAAATTGGGAGACCGACGTTTCTCGCGAATAGTAACTACTGTATTACGTGCTCTGTATCATTGAAGTTAAGTTGAACCTTCTTTGTCTGGTAATGTTTTTTTTAATTACCATATATTTGGTGTAAGGTATAATTATTATTAAATTTGATGCTGCGCTGCTTTTTTGGATTTTTAAGTATTACTCAATAAATATTAATAAACACTGAATCACAGAGTAGTTCATCAATAATAGCTCTGCTAATGCCAAATCCAATTAGAATTAGCAAGCAATAAATTTCTCATATTATTCTTGAATATATACGAATATGTAAGATTAGAATATGCAATAGTTTATATGCTCAATATCTACATCAAGCTTAGATTTAATGGCATTATCGCTCCCAAAGTTAAAGATGATAAGATTATTCCATGGGGAGTTATTTCCTAATATATATGCTATGGGCTGTCTTCTTGAGGAAGTTTGTTTCCCTTTGGGAAAGAGACTTTTACATGCTATTAAAAGTCTTATTTACAAGCATTTAAGTAAGGATCGGTTTGATCAAAGGAAAAAATAAATCAACCATTTGAGATGATAGTGAGCTGGGATAGAAAATCAAACAAAGTTTTTGTTGTAGATTTTATCATTTATGTTTCACCATTTTAATCATTAATGAAGAATGAATGCACTAAAGGCATCATGGATGATTGATGCACCTAAATATGACTATATTTAGAGTGACTTTCTAGTTTCCATTATCTTTGGGTGCTGCTACTTTTTGTTACTTCTTTAGAAAGTAGTACATCATAAAGTACTTTTTAGAATGCATTTTTCAAAGTGTGCCGTGAAAATTACAGTGTTATCCATAGTCCACAATCACCATCAATGAATACCAACTCATCAGCCATTCATTCAACTGACAATGATACAGCATTCAAATATATACTATTCTACTCAACAGCTTCATTGAAGCTTTTTCTGCAACAAATTCACAGTGTCTTAGTGCAACAACCTAAAATGAGCCTAAAGTTGCATTTGGGACAGTGTTGTTGGTACTACACATATATAAAACTCATATTATTAGTTTGGTTTATATCATTTGATGAGCTGCTTTCTATGTGCTTCTTTAGATAGCTGCCCCTTAAATTATTCTTGTGAAACTCCAAGATGTAGCATGACTGCTGTATACTATTTAGCTTATGACTTCCAAGCACCACTAATACTTGTAAACTTGCCAATCTTTACCTTACGCATTGATTAACCATTGCTACTATCATCTACTACATCAATGTGATAGAAGGACATTCAAACAATAACTACAATATCTTCTTAACCTTCAACTTCATGGAAAATTTATCATCACTTGCTTCACAACAATTTTCTATGCAGATGCATCACAACTTTTAATAAATGTTACTGCACCAATCAGAGCCGGGTTTTGATTTGTTGTCAAGTCTTTAAGAAGGGGGAGTCATTGCTCATGAGCCGGAGTCATTCTCGAACAAGGCTTCTTTTTAGTATAACAATGTTTGCAGGATCACAAGATGGATGTCATGGATGAGCATGTATGATGACAATATAATGACTTTAGCTCTTTGCTAGTATTTATGCTTTGTCAACCATATTGGGAAATCAAGAATGAAAGAATGAGATGTTTATTGGGCCTTTAAATAATGGGCCAGGCTTGACTTTAGACCTGTAATTTTGATAATTATGAAAGAAGAGGGTATTTGTGTAAAAGTTAAAGTTTGGCACCTCTAAATAGAAAAATA

Network for GWHGAAEX014339

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01293.19	PEPCK_ATP	155	621	2.30E-206

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01610	E4.1.1.49, pckA	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Biosynthesis of antibiotics	map01130
		Carbon metabolism	map01200
		Glycolysis / Gluconeogenesis	map00010
		Citrate cycle (TCA cycle)	map00020
		Pyruvate metabolism	map00620
		Carbon fixation in photosynthetic organisms	map00710

Gene Ontology

GO term	Ontology	Name
GO:0006094	Biological Process	gluconeogenesis
GO:0004611	Molecular Function	phosphoenolpyruvate carboxykinase activity
GO:0005524	Molecular Function	ATP binding
GO:0017076	Molecular Function	purine nucleotide binding
GO:0004612	Molecular Function	phosphoenolpyruvate carboxykinase (ATP) activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	21.120
SRP064423	SRR2545915	Juvenile tuber	10.450
SRP108465	SRR5643513	five period of Gastrodia elata	114.710
	SRR5643514	five period of Gastrodia elata	43.250
	SRR5643515	five period of Gastrodia elata	146.040
	SRR5643524	five period of Gastrodia elata	112.210
	SRR5643525	five period of Gastrodia elata	33.480
	SRR5643528	five period of Gastrodia elata	19.330
	SRR5643658	five period of Gastrodia elata	43.370
	SRR5643659	five period of Gastrodia elata	208.930
	SRR5643660	five period of Gastrodia elata	202.930
	SRR5643661	five period of Gastrodia elata	191.350
	SRR5643662	five period of Gastrodia elata	173.750
	SRR5643663	five period of Gastrodia elata	250.330
	SRR5643664	five period of Gastrodia elata	55.330
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	44.080
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	27.310
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	27.500
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	50.610
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	95.720
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	120.210
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	47.630
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	105.670
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	22.750
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	37.950
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	34.310
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	34.310
SRP279888	Gastro	Gastrodia elata tuber	229.10
	Juven	Juvenile tuber	132.93
	Mother_Gastro	Mother tuber of Gastrodia elata	351.86
	Mother_Juven	Mother tuber of Juvenile	76.28