Gene detail

Detail information of GWHGAAEX014340/evm.TU.scaffold_59.93

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG2006	WD40 repeat protein
nr	gi\|695003874\|ref\|XP_009387773.1\|	PREDICTED: protein RIC1 homolog [Musa acuminata subsp. malaccensis]
trEMBL	tr\|D7UCG8\|D7UCG8_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI40433.3}
TAIR	AT3G61480	Quinoprotein amine dehydrogenase, beta chain-like; RIC1-like guanyl-nucleotide exchange factor

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000068	1700700	1792121	+

Transcript Sequence
>GWHTAAEX014340 ATGGATGTTACTCTTGGGCTTAACCAATTGGGATCAATCATGGTTGTTGGATTGGCCAGATCGAACGACCTAAACGTTATATGGCGAATTATGTCGATTAACAAATTTATGGATGTTACATCGGACATGGCCGATGACTCATGGGACTGTGATGATCACTACATGTGGTTGCAGATTTTGTTGGCGGGTCGCCGAAGAACTCGTGACCGTCTGCTTCGCCGGGAAACATTGAAGCACTCCCCGATTCAGATCCGACCCCGGCGAGCCACGATGTATATGCCCTACGGATGGCCGCAGGTTATCCATGTCAGCAACGGCGCTAGGTCATCCGTCGCTCCCTCCGACGCCATTGGCATATTCGCCAATAGAATCATATATCTAAAAATCGCTTACCGCCTTCTACTCCTTGTCACGCCAACTCACCTTCAACTATGGAGCTGTTCACAGCACAAGGTCAGAATTGGGAAGTACGCTAGAGACGCCGAGTCGGTTCAGCGGGAAGGAGAAAATTTGCAAGCTATTTGGAGTCCCGATACTAAAACTATCGCCGTACTTACTTCTTCCTCATATTTTCATATTTACAAAGTTCAGTTTTCTGGGAAAAGATTATTAATTGCGGGCAAACAACCTAGCGGCTTGTTTCTTGCTAATATATCTCTTGTCATTAATGAGAAGGCTCCTTTCTTAGAGAAAAACTGGACCACGAGCAATTTTGTTTGTGATAACAAAAGCATTCTCTTTGGACTTTCCAATGGGCATTTACAACTTGTGAATTGGAATGCAGAGTTCTCTAGCCACTTCGAAGTCTGCAACTATATTAGCAATCCTAGCAGTTTAGATGGCACTTATCATTCATTAGTGAACATAACTGCTGGCAGGATTAGAAATTCAAGCAATCCAGCATCTATTGCCACTTCTGCTGGAAAGTCCGCAATTGTGCAGCTTGAATTATCTTTACAACTGAAGTTGCTAGTTATTTTGAATTCACATGGTCAGGTTACTATATGTTCAGTAAGTAAAAAGGGTTTAAAGCAAACTGATTGCATTAAAGCTGAATGGAGGTTAAACAAAAACGATGTCATGTGTGCTTCAATAGCTCCGGAACAGCAAATTCTTGCTGTTGGTTGTAGTAGCGGTGTAGTGGAGCTATATGATTTGGCAGATAATGCATCTATTCTTCGTACTGTGTCTTTGTATGACTGGGGATACTCAATGGAGGATACTGGCCCCGTTAGTTGTATTAATTGGACTCCTGATAATTATGCTTTTGCCGTTGGATGGAAGTTTAGAGGACTTGCTGTGTGGTCTGTATCTGGATGTCGGTTGATGTGCACAATTCGCCAAGCTAGAGTAAATGCTATTCAATCACCTATGATGAAAGTTAATGCCGAAGTAAGAAGTGAACCTCTTATGGGTGGAACGTCACTATTACAATGGGATGAATATGGGTACAAGCTTTATGCTGTTGAGGAGAGTTCATCAGATAAAATTCTTGCATTTTCATTTGGAAAATATTGCCTCAACAGAGGGCTTTCCGGTACAACATACGTACGACAAATTTTGTATGGTGAAGATAGGATTCTTATCGTGCAATCTGATGATAATGATGAACTGAAAATATTGCATCTTAATCTTCCAGTAGCCTATATTTCTCAAAATTGGCCAGTTCTACATGTTGTTGCTAGCAAAGATGGCATGTACTTGGCAGTTGCAGGTTTTCATGGTCTTATCCTGTATGACTTGCTTCATAAAAGATGGCGTTTATTTGGAGATGTGACTCAGGAGCAAAAGATTGAGTGTAAAGGTCTTCTCTGGATGGGGAAAATCATTATATTATGCAACTTCATTGATTCTTTGAACACGTATGAACTCTTATTTTTCCCACGATATCATCTTGATCAAAGCTCCTTGCTTTTTCGGAAGGCATTACCTGGAAAACCAATTATCATGGATGTTTTACAGGATTACATACTAATAACATATCGTCCATTTGATGTTCATATCTTTCATGTAAAGGTCTCGGGAGATTTATCTCCTTCTACAATACCATGTTTGCAGCTTTCCACAGTGAGAGAACTTTCAATTATGACTGCAAAGAGCCATCCTGCATCTATGAGATTCATCCCCAATTTTTCACATGGAGGTAAAATGAATGACAGTTTGTCTTCGTCTTCAAATCTCTTAGACCACCAGCCTTCGAGATGTTTAATATTGAGGACCAATGGAGAACTTTCATTACTTAATTTGGATGACGGACATGAACAAGTACTAACAAATTCTATTGAGCTTTTTTGGGTTACTTGTGGATATTCAGAGAAGGAAAATCTTGTTGAGGAAGTATCTTGGATAGACTATGGCCACCGAGGTATGCAGGTTTGGTATCCGTCTCCTGGAACTGATCCTTTTAAACAAGAAGATTTTTTCCAGCTGGATCCAGAACTTGAATTTGATCGCGAAGTTTATCCTCTGGGTCTTCTTCCCAATGCTGGCATAATTGTTGGTGTTTCTCAAGGGATGTCCTTTACTACCTGCTCTGAGTTTCCATGTTATGAGCCATGTCCTCAAGCTCAAACAATTTTGCATTGTTTGCTCCGGCATCTTCTTCAGAGGGATAAAAATGAAGAAGCTTTGAGATTGGCCTTTTTATCAGCAGAAAAGCGTCATTTCTCCCATTGTTTGGAATGGCTCCTTTTTACTGTATTTGATGCTGAAATTTCAAGGCAAGGCACTAACAAGATTCATGTTCCAACATTTACTAAATCGTCAACTGTCTCACTTTTGGAGAAGACTTGCAATTTACTTAAAAATTTCCCAGAATACCAAGATGTGGTTGTTAGTGTTGCTAGGAAGACCGATGGACGTCATTGGGCTGATCTGTTTACTGCTGCTGGAAGATCAACCGAGTTGTTTGAAGAATGTTTCCAGAGAAGATGGTATAGAACTGCTGCTTGCTATATATTGGTCATTGCTAAACTTGAAGGTCCTGCAGTTAGTCAATACTGTGCTCTTCGCTTGTTACAGGCAACTCTTGATGAATCTTTGTATGAACTTGCTGGGGAACTGGTTCGATTCTTGCTAAGATCTAGCAGAGAGTACGAAAATTCCACTACCGAGACTGATAAGTCTCCTAGAATTTTGGATTATTTTATATTTGGTTCAAGTTGGAGGCAATCAGCTGATTGGAAGAGTACATCATTCAAGGAGCCTAGTGCAAATGTTGCTTCTGTTAGGAACATTTTGGAAAACCATGCCAGCTTCTTAATGTCTGGGAAAGAGCTGTCTAAACTGGTAGCATTTGTTAAAGGGACTCAGTTTGATCTTGTGGATTTTCTTAAGCGGGAAAGACATGGATGTGCTCAGCTGGATAGTTTCGCTTCAGGGTTTGAATTGATTGGTCAAAAGCTGCAAATGGGTACACTCCAGAGACGCCTAGATGCTGAGTTTCTTCTTGCACATATGTGCTCAGTCAAGTTTAAGGAGTGGATTGTAGTCCTTGCTACTTTACTAAGACGTATGGAGAATATCAGAAGATCACCCATGGTTTCCAAGTGGCTTTGTACGGGGTTCCCAAGTTATTTCATCTTGGCTCAAGTCTTACCCAGGTTTTATCTGAGGCAAATAACTAGTTTGCCATATGGTAGTATGGCATTAGTGGTGTAGTAGGTGACCACGTTCATTGTATGAAGAGAATGTAGAATGGGAAGATACATGTAGCAATGGTAGTTACTTGTACGATTTACATTTATATTGTTTTAATATTCTTTTTTTTCATTTGACCATAGCTTGGTGGTCTTGTTGTTGTCACTGGCTGTAAGTAGCCAAGAATTAATGTTAGAAGGGCTTTATTATTTTTTATTTTTTACTATACCTTGTTTCCTAATTCACTGTAGTTGTTTATAAAATGC

Network for GWHGAAEX014340

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module8

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07064.12	RIC1	779	1031	2.50E-63

Protein Sequence

>GWHPAAEX014340
MDVTLGLNQLGSIMVVGLARSNDLNVIWRIMSINKFMDVTSDMADDSWDCDDHYMWLQILLAGRRRTRDRLLRRETLKHSPIQIRPRRATMYMPYGWPQVIHVSNGARSSVAPSDAIGIFANRIIYLKIAYRLLLLVTPTHLQLWSCSQHKVRIGKYARDAESVQREGENLQAIWSPDTKTIAVLTSSSYFHIYKVQFSGKRLLIAGKQPSGLFLANISLVINEKAPFLEKNWTTSNFVCDNKSILFGLSNGHLQLVNWNAEFSSHFEVCNYISNPSSLDGTYHSLVNITAGRIRNSSNPASIATSAGKSAIVQLELSLQLKLLVILNSHGQVTICSVSKKGLKQTDCIKAEWRLNKNDVMCASIAPEQQILAVGCSSGVVELYDLADNASILRTVSLYDWGYSMEDTGPVSCINWTPDNYAFAVGWKFRGLAVWSVSGCRLMCTIRQARVNAIQSPMMKVNAEVRSEPLMGGTSLLQWDEYGYKLYAVEESSSDKILAFSFGKYCLNRGLSGTTYVRQILYGEDRILIVQSDDNDELKILHLNLPVAYISQNWPVLHVVASKDGMYLAVAGFHGLILYDLLHKRWRLFGDVTQEQKIECKGLLWMGKIIILCNFIDSLNTYELLFFPRYHLDQSSLLFRKALPGKPIIMDVLQDYILITYRPFDVHIFHVKVSGDLSPSTIPCLQLSTVRELSIMTAKSHPASMRFIPNFSHGGKMNDSLSSSSNLLDHQPSRCLILRTNGELSLLNLDDGHEQVLTNSIELFWVTCGYSEKENLVEEVSWIDYGHRGMQVWYPSPGTDPFKQEDFFQLDPELEFDREVYPLGLLPNAGIIVGVSQGMSFTTCSEFPCYEPCPQAQTILHCLLRHLLQRDKNEEALRLAFLSAEKRHFSHCLEWLLFTVFDAEISRQGTNKIHVPTFTKSSTVSLLEKTCNLLKNFPEYQDVVVSVARKTDGRHWADLFTAAGRSTELFEECFQRRWYRTAACYILVIAKLEGPAVSQYCALRLLQATLDESLYELAGELVRFLLRSSREYENSTTETDKSPRILDYFIFGSSWRQSADWKSTSFKEPSANVASVRNILENHASFLMSGKELSKLVAFVKGTQFDLVDFLKRERHGCAQLDSFASGFELIGQKLQMGTLQRRLDAEFLLAHMCSVKFKEWIVVLATLLRRMENIRRSPMVSKWLCTGFPSYFILAQVLPRFYLRQITSLPYGSMALVV

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	127.490
SRP064423	SRR2545915	Juvenile tuber	98.600
SRP108465	SRR5643513	five period of Gastrodia elata	21.960
	SRR5643514	five period of Gastrodia elata	19.750
	SRR5643515	five period of Gastrodia elata	17.170
	SRR5643524	five period of Gastrodia elata	18.520
	SRR5643525	five period of Gastrodia elata	21.640
	SRR5643528	five period of Gastrodia elata	15.280
	SRR5643658	five period of Gastrodia elata	24.490
	SRR5643659	five period of Gastrodia elata	20.760
	SRR5643660	five period of Gastrodia elata	20.930
	SRR5643661	five period of Gastrodia elata	17.650
	SRR5643662	five period of Gastrodia elata	21.180
	SRR5643663	five period of Gastrodia elata	22.750
	SRR5643664	five period of Gastrodia elata	27.070
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	41.840
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	26.840
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	31.910
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	52.600
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	47.510
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	61.310
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	44.500
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	48.010
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	25.030
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	31.610
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	24.800
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	24.800
SRP279888	Gastro	Gastrodia elata tuber	24.90
	Juven	Juvenile tuber	23.81
	Mother_Gastro	Mother tuber of Gastrodia elata	19.02
	Mother_Juven	Mother tuber of Juvenile	23.25