Detail information of GWHGAAEX014341/evm.TU.scaffold_59.94


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG42656.00E-117Predicted E3 ubiquitin ligase
nrgi|566176061|ref|XP_006381461.1|8.42E-156hypothetical protein POPTR_0006s13060g [Populus trichocarpa]
Swissprottr|Q9S752|LOFG2_ARATH2.00E-117Probable E3 ubiquitin-protein ligase LOG2
trEMBLtr|U5G6U7|U5G6U7_POPTR3.00E-156Uncharacterized protein {ECO:0000313|EMBL:ERP59258.1}
TAIRAT3G097706.00E-117RING/U-box superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000006818226511832380+
Transcript Sequence

Network for GWHGAAEX014341

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13920.5zf-C3HC4_33173634.20E-15
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms75.390
SRR2545915Juvenile tuber58.610
SRP108465SRR5643513five period of Gastrodia elata86.560
SRR5643514five period of Gastrodia elata90.280
SRR5643515five period of Gastrodia elata76.470
SRR5643524five period of Gastrodia elata93.870
SRR5643525five period of Gastrodia elata183.890
SRR5643528five period of Gastrodia elata157.660
SRR5643658five period of Gastrodia elata201.280
SRR5643659five period of Gastrodia elata63.600
SRR5643660five period of Gastrodia elata77.170
SRR5643661five period of Gastrodia elata82.900
SRR5643662five period of Gastrodia elata84.940
SRR5643663five period of Gastrodia elata70.540
SRR5643664five period of Gastrodia elata104.550
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1102.280
SRR6049655Rhizomagastrodiae_C368-T10_good_184.490
SRR6049656Rhizomagastrodiae_C368-T07_good_193.380
SRR6049657Rhizomagastrodiae_C368-T07_good_1115.120
SRR6049658Rhizomagastrodiae_C368-T04_good_1143.710
SRR6049659Rhizomagastrodiae_C368-T04_good_1153.990
SRR6049660Rhizomagastrodiae_C368-T01_good_1108.210
SRR6049661Rhizomagastrodiae_C368-T04_good_1115.890
SRR6049662Rhizomagastrodiae_C368-T01_good_174.660
SRR6049663Rhizomagastrodiae_C368-T01_good_179.240
SRR6049664Rhizomagastrodiae_C368-T10_good_1100.260
SRR6049665Rhizomagastrodiae_C368-T10_good_1100.260
SRP279888GastroGastrodia elata tuber 112.21
JuvenJuvenile tuber183.52
Mother_GastroMother tuber of Gastrodia elata 130.72
Mother_JuvenMother tuber of Juvenile 177.92