Detail information of GWHGAAEX014342/evm.TU.scaffold_59.95


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|307154887|ref|YP_003890271.1|7.00E-179chorismate synthase [Cyanothece sp. PCC 7822]
KOGKOG44920Chorismate synthase
nrgi|672135702|ref|XP_008791524.1|0PREDICTED: chorismate synthase, chloroplastic-like [Phoenix dactylifera]
Swissprottr|Q42884|AROC1_SOLLC0Chorismate synthase 1, chloroplastic (Precursor)
trEMBLtr|B9SUA2|B9SUA2_RICCO0Chorismate synthase {ECO:0000256|RuleBase:RU000605}
TAIRAT1G488500chorismate synthase, putative / 5-enolpyruvylshikimate-3-phosphate phospholyase, putative

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000006818340871864304+
Transcript Sequence

Network for GWHGAAEX014342

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01264.20Chorismate_synt704173.30E-139
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01736aroC Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Biosynthesis of antibioticsmap01130
Biosynthesis of amino acidsmap01230
Tryptophan metabolismmap00380

Gene Ontology

GO term OntologyName
GO:0009073Biological Processaromatic amino acid family biosynthetic process
GO:0004107Molecular Functionchorismate synthase activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms78.720
SRR2545915Juvenile tuber78.490
SRP108465SRR5643513five period of Gastrodia elata102.460
SRR5643514five period of Gastrodia elata85.030
SRR5643515five period of Gastrodia elata103.800
SRR5643524five period of Gastrodia elata92.820
SRR5643525five period of Gastrodia elata165.380
SRR5643528five period of Gastrodia elata205.240
SRR5643658five period of Gastrodia elata189.160
SRR5643659five period of Gastrodia elata106.070
SRR5643660five period of Gastrodia elata106.460
SRR5643661five period of Gastrodia elata110.070
SRR5643662five period of Gastrodia elata119.200
SRR5643663five period of Gastrodia elata119.910
SRR5643664five period of Gastrodia elata101.110
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_176.420
SRR6049655Rhizomagastrodiae_C368-T10_good_158.740
SRR6049656Rhizomagastrodiae_C368-T07_good_181.900
SRR6049657Rhizomagastrodiae_C368-T07_good_182.010
SRR6049658Rhizomagastrodiae_C368-T04_good_195.590
SRR6049659Rhizomagastrodiae_C368-T04_good_1105.220
SRR6049660Rhizomagastrodiae_C368-T01_good_193.960
SRR6049661Rhizomagastrodiae_C368-T04_good_193.430
SRR6049662Rhizomagastrodiae_C368-T01_good_194.650
SRR6049663Rhizomagastrodiae_C368-T01_good_185.320
SRR6049664Rhizomagastrodiae_C368-T10_good_172.640
SRR6049665Rhizomagastrodiae_C368-T10_good_172.640
SRP279888GastroGastrodia elata tuber 145.66
JuvenJuvenile tuber79.11
Mother_GastroMother tuber of Gastrodia elata 123.72
Mother_JuvenMother tuber of Juvenile 107.75