Detail information of GWHGAAEX014343/evm.TU.scaffold_59.96
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|300312135|ref|YP_003776227.1| | 3.00E-13 | thioredoxin 1 [Herbaspirillum seropedicae SmR1] |
| KOG | KOG0190 | 0 | Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) |
| nr | gi|743902057|ref|XP_011044358.1| | 0 | PREDICTED: protein disulfide isomerase-like 1-4 [Populus euphratica] |
| Swissprot | tr|Q9FF55|PDI14_ARATH | 0 | Protein disulfide isomerase-like 1-4 (Precursor) |
| trEMBL | tr|B9HQ95|B9HQ95_POPTR | 0 | Protein disulfide-isomerase {ECO:0000256|RuleBase:RU361130} |
| TAIR | AT5G60640 | 0 | PDI-like 1-4 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000068 | 1866118 | 1885209 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX014343
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00085.19 | Thioredoxin | 91 | 191 | 8.90E-29 |
| PF13848.5 | Thioredoxin_6 | 233 | 403 | 1.90E-26 |
| PF00085.19 | Thioredoxin | 429 | 533 | 6.80E-22 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K09580 | PDIA1, P4HB | Protein processing in endoplasmic reticulum | map04141 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0045454 | Biological Process | cell redox homeostasis |
| GO:0016853 | Molecular Function | isomerase activity |
| GO:0003756 | Molecular Function | protein disulfide isomerase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 164.670 |
| SRR2545915 | Juvenile tuber | 182.770 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 262.240 |
| SRR5643514 | five period of Gastrodia elata | 301.020 | |
| SRR5643515 | five period of Gastrodia elata | 246.240 | |
| SRR5643524 | five period of Gastrodia elata | 264.910 | |
| SRR5643525 | five period of Gastrodia elata | 133.300 | |
| SRR5643528 | five period of Gastrodia elata | 170.560 | |
| SRR5643658 | five period of Gastrodia elata | 148.810 | |
| SRR5643659 | five period of Gastrodia elata | 116.150 | |
| SRR5643660 | five period of Gastrodia elata | 116.380 | |
| SRR5643661 | five period of Gastrodia elata | 127.510 | |
| SRR5643662 | five period of Gastrodia elata | 93.720 | |
| SRR5643663 | five period of Gastrodia elata | 112.300 | |
| SRR5643664 | five period of Gastrodia elata | 88.590 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 231.580 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 274.910 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 261.980 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 191.600 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 199.250 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 198.090 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 189.610 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 198.550 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 301.290 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 265.700 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 388.460 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 388.460 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 108.14 |
| Juven | Juvenile tuber | 121.32 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 180.52 | |
| Mother_Juven | Mother tuber of Juvenile | 143.66 |