Detail information of GWHGAAEX014353/evm.TU.scaffold_59.108
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|427735041|ref|YP_007054585.1| | 1.00E-49 | glutamyl-tRNA reductase [Rivularia sp. PCC 7116] |
| nr | gi|695079636|ref|XP_009387243.1| | 8.17E-146 | PREDICTED: glutamyl-tRNA reductase 2-like [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|P0C587|HEM1_ORYSJ | 5.00E-141 | Glutamyl-tRNA reductase, chloroplastic (Precursor) |
| trEMBL | tr|M0U9N4|M0U9N4_MUSAM | 3.00E-146 | Glutamyl-tRNA reductase {ECO:0000256|RuleBase:RU000584} |
| TAIR | AT1G58290 | 2.00E-122 | Glutamyl-tRNA reductase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000068 | 1963479 | 1964276 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX014353
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module6 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01488.19 | Shikimate_DH | 1 | 124 | 4.10E-40 |
| PF00745.19 | GlutR_dimer | 138 | 244 | 1.30E-26 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0033014 | Biological Process | tetrapyrrole biosynthetic process |
| GO:0055114 | Biological Process | oxidation-reduction process |
| GO:0008883 | Molecular Function | glutamyl-tRNA reductase activity |
| GO:0050661 | Molecular Function | NADP binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.450 |
| SRR2545915 | Juvenile tuber | 0.510 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 1.090 |
| SRR5643514 | five period of Gastrodia elata | 0.820 | |
| SRR5643515 | five period of Gastrodia elata | 1.250 | |
| SRR5643524 | five period of Gastrodia elata | 0.700 | |
| SRR5643525 | five period of Gastrodia elata | 2.820 | |
| SRR5643528 | five period of Gastrodia elata | 2.590 | |
| SRR5643658 | five period of Gastrodia elata | 4.180 | |
| SRR5643659 | five period of Gastrodia elata | 1.390 | |
| SRR5643660 | five period of Gastrodia elata | 2.380 | |
| SRR5643661 | five period of Gastrodia elata | 0.660 | |
| SRR5643662 | five period of Gastrodia elata | 1.200 | |
| SRR5643663 | five period of Gastrodia elata | 0.990 | |
| SRR5643664 | five period of Gastrodia elata | 1.610 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 2.350 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 0.640 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 2.790 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 2.370 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 3.220 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 5.050 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 2.630 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 3.800 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 3.030 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 4.180 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 1.250 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 1.250 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.67 |
| Juven | Juvenile tuber | 0.35 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 1.87 | |
| Mother_Juven | Mother tuber of Juvenile | 0.85 |