Gene detail

Detail information of GWHGAAEX014356/evm.TU.scaffold_59.111

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|108759753\|ref\|YP_632767.1\|	1.00E-40	M28 family peptidase [Myxococcus xanthus DK 1622]
KOG	KOG2194	0	Aminopeptidases of the M20 family
nr	gi\|743862224\|ref\|XP_010943482.1\|	0	PREDICTED: endoplasmic reticulum metallopeptidase 1 isoform X1 [Elaeis guineensis]
trEMBL	tr\|M0SYJ4\|M0SYJ4_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr5P14650_001}
TAIR	AT5G20660	0	Zn-dependent exopeptidases superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000068	2022928	2090008	+

Transcript Sequence
>GWHTAAEX014356 GCCAAATTCATCATTAACGCGTACCGGCAATCGTCATCATTGAGGTGGACTGGCGGAGCTTCGAGCTTCAGCCTTTTGTTGCTGAACGGATTCGTTCTCCGAACAAAAAGTCTTTGCACCGAATGACTACAAATGAATAGAAGTATCGAGTTCTCGTTCATAAGCATCGACAATTCATGAGTTCAATTAGCGGATTCGGCTCTGTGCTTGATTTGTAAACTAAAACATTCATAAAATGGTCCACGAAGCTAGCATTTCTGATTCCAACACAATGCCATCCGAGGTTGTTGAGGTTTTAAATGATCAAAATGCTAACAGAACTAATAGAACGGGTTCTTTATGGCTGGCTTTGTTTGCCCTCTTGCTAACTGGGTCCTGGGCAATTTATCATTTTCAATGTAATAATCTTCCTATGCCATTAACAACTGAGCAGGCCGGTAAACGGGGGTTTTCAGAAGTTTCCGCTCTGGAGCATGTAAAAAATTTGACTGGATTTGGACCTCATCCTGTTGGTTCTGATGCTCTTGATCTTGCCATACAATATGTTATGTTGGCATCAGAAAATATTAAGAAGTCTGCTCATTGGGAGGTCGATGTCCAAGTGGATTTCTTTGCTGCTAAAACTGGTGTAAATAACCTTGTTGGTGGTTTGTTCAAAGGGAAAACGCTAGTTTATTCAGACCTGAAGCATGTTGTCCTGAGGATCTCGCCAAAGCATCAGCCTGAAGCTAAAGAAAATGTTGTTTTGGTTTCTTCTCACATTGATACAGTTTTCTCAACGGAAGGAGCAGGTGACTGTAGCTCATGTGTGGGTGTGATGTTGGAGCTTGCTCGTGGAATATCTCAATGGGCTCATGGATTTCAGAATGGTGTCATTTTTTTATTTAACACTGGAGAAGAGGAGGGTCTTAATGGTGCTCACAGTTTTATTACACAGCATCCTTGGAGGAACACGATACGCTTTATTGTTGATTTGGAAGCAATGGGTGTTGGAGGAAAATCTAGCATTTTTCAGACTACTGACATGCTGTGGGCTATTGAAACCTATGCCAATGTAGCAAAATACCCATCTGGTCAAATAATTTCTCAGGATGTTTTTAATTCTGGTGCAATTAAATCAGCTACAGATTTTCAAGTTTACAAGGAAATTGCTGGCCTTCCGGGCCTTGATCTTGCATTTACAGATTATACTGCTGTATATCACACTAAGAAAGATATGTTGAAGCTATTGAAGCCAGGATCACTTCAGCATCTTGGGGAAAATATGCAAGCATTCTTGCTTCAAGTTGCTAGGTCTCCAAATCTTTACAATATGACAGCAGCATCAAATAAGGGACAAGATGAGAACAGGCCCATATATTTTGATATTCTGGGAATGTACATGATTGTGTATTCACAGCGTCTTGCAAGCATGCTTTCCAATTCGGTGGTGCTGCAAGCTCTTTTACTATTGACAACTTCAGTGGTTATGGGCGGCTTTTCTGCTGCAATATCATTTGGATTATCCTGTTTTTCTATAATTCTAATGTGGTTGCTTGCTCTGGGATTGTCTATCGTAGTAGCCTTTATCATACCTCTAATCTCTTTCTCTCCTGTGCCATATATAGCAAGTCCATGGTTGGTAGCTGGTTTATTTGGCACGCCTGCAGTACTTGGTGCTATTGCTGGTCAGCATTTGGGCTTTCTATTTCTTCAGAAACATCTTAGGAAGGTCATTTCAAAAAGGATGGAAGGCATCTCCATTCATGCAGAAAATATAGTGAAATGGGAGGCAGAAAGATGGATTTTTAAAGCAGGATTAATTCAATGGCTTATACTTCTTTCCCTGGGGAGCTTTTATAAGATTGGATCTTCATATATAGCTCTCGTTTGGTTGGTTTGTCCTTCTTTTGCTTATGGACTTATGGAAGCAACCCTATCTCCTACGAGGTTACCAAAACAGCTCAAAATTGCTACATTATTTCTTAGTTTAACCATACCTGCCTTGCTTTCTTTTGGTAATGCTATAAAGCTGGTGGGGTTATTAATTGGCACCTTAGTTCGTTTTGATAGGAATCCCGGTAGTTCTTATGAATGGCTAGGGAATGTAATACTTGCTGCATTCATTTCTTCAATAGTTTGTCTTATGCTGGTTTATCTCCTTTCATATGTTCATATTTCAGAGGCAATGAGATCGATAATGTTTTCAATGTGTGCGTTGATGGGGCTAACATTCATTGCTATTGCAACTGGATTTTTTCCTGCTTTCACAGAGGACATTTCTCGCGCTGTTAATGTTGTGCATGTTGTGGAGACAAACGGAAGCTATTCTCACAATCAGGAACCGTCTTCATATGTTTCTTTTTATTCTCTTACTCCAGGTAACTTGGAGGTTGAATCTAAGAGATTGAGTGATGAGGGATTTGATTGTGGTAGGAAAACTACGCTTGATTTTGTTTCTTTTACTGTAAAATACGCTTGTTTAAGCTTTAAGGATACTGATGCTGGATGGAGTAAGATGGAGATTCCTTTACTTAGCGTTGAAAGTGATTCCACCAGTATTGGCTCTAGAATAACACGGGCTTTGGTTGATACTAAACAATCCAACCGTTGGTCACTTGCCATCAACGCAGAGTTAATCAGTGAATTTTCATTTGAAGTCAATTCTGAAGAACTGCTGCCTTCTGGCGAAACGAGCAGCGTGGACGGGTGGCACATCATTCAGTTCGCTGGAGGGAAGCAGTCACCGAAAATGTTTCACTCAAACCTCATCTGGAGAAAGAATGTGACCCGCCCTTCAGAGGGCTCTCCTTCTACCCTGTTGCTAAAATTAAGGACGGATATCAACAGAGTTACTCCAAAGACTGCAAGAGTTCTTGAGAAGCTTCCCAGCTGGTGCGCCCTCTTCGGCAAGTCCACTTCACCTTATACATTCGCTTTCCTCACCAGCCTTCCGGCTGACTTCTAAAGTCGATGGAACTACTGTTCTATTGTAGCATTTGAAGTTTAATGCTTGCAGAACTCTCAATGTCACTCAATTCTATTAGAGAGAGCATAATAACAGAACTGGTTAGATATTAGTTCTGTAATCATTAAAGTTTGGACAATAAATATGTAGAATTTTATGGCTTGTATTATGTATTGTTCCTTAGGAACCTCTGAATTATTAGTAATAATTATCAGCTAGCTACCATGTGTTAGCTATTCAA

Network for GWHGAAEX014356

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04389.16	Peptidase_M28	160	347	8.00E-42

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	37.060
SRP064423	SRR2545915	Juvenile tuber	54.240
SRP108465	SRR5643513	five period of Gastrodia elata	15.510
	SRR5643514	five period of Gastrodia elata	15.440
	SRR5643515	five period of Gastrodia elata	16.580
	SRR5643524	five period of Gastrodia elata	15.030
	SRR5643525	five period of Gastrodia elata	20.810
	SRR5643528	five period of Gastrodia elata	17.680
	SRR5643658	five period of Gastrodia elata	14.360
	SRR5643659	five period of Gastrodia elata	17.440
	SRR5643660	five period of Gastrodia elata	17.430
	SRR5643661	five period of Gastrodia elata	14.670
	SRR5643662	five period of Gastrodia elata	16.650
	SRR5643663	five period of Gastrodia elata	21.180
	SRR5643664	five period of Gastrodia elata	15.970
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	26.410
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	18.520
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	28.130
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	29.700
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	34.530
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	35.890
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	29.880
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	35.150
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	28.170
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	30.790
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	24.220
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	24.220
SRP279888	Gastro	Gastrodia elata tuber	21.37
	Juven	Juvenile tuber	16.02
	Mother_Gastro	Mother tuber of Gastrodia elata	13.90
	Mother_Juven	Mother tuber of Juvenile	14.73