Gene detail

Detail information of GWHGAAEX014357/evm.TU.scaffold_59.112

Functional Annotation

Database	Orthologs	Annotation
nr	gi\|695019889\|ref\|XP_009396973.1\|	PREDICTED: auxin response factor 18-like [Musa acuminata subsp. malaccensis]
Swissprot	tr\|Q653H7\|ARFR_ORYSJ	Auxin response factor 18
trEMBL	tr\|V4SPI5\|V4SPI5_9ROSI	Auxin response factor {ECO:0000256\|RuleBase:RU004561}
TAIR	AT4G30080	auxin response factor 16

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000068	2094154	2097464	-

Transcript Sequence
>GWHTAAEX014357 CTAGCCAAATCCCCGACTCCGTAAGCGACACTTCAGTCAAATGCAGAGAGATTCGACCGGAGAATTTCCATTTTACTTTCCGGGATTGTTCTTTCAGATGTAGATCAGCAGCTCGGAGGCGAATCCCAGCTGCAATTTCTTCGCAGAAATTTCAAAAGAATAAAGAATTTGTTGGGAGGAACGGTTTCCTCCTGATAATCCGCGAAGAAGTGAGCCAGCAGCGATATCTCAAGCTCCTGTTGTAGAAATCCCTATAAAATGGCACTTTCCGCTCCTCTTTTTCAAAATTTGACGGCAAGAATCTGAAGGAAGTTTCAGAGCTTTGGATTTTTTTGCGAGGGATTCAACATTCGGAGTCGATTCACAATGGAGATTGAAAATTGCTTGGATTCAGAATTATGGCATGCCTGTGCTGGAGGCATGACGCAGACTCCTAGGGTAAATTCCGTAGTCTATTACTCACCCCAGGGCCATATTGAACATTCGAAAAGCTCGCTGGAATTTGATAAATTCATGAATATTCCTCCGCTGATTCTTTGCCGCGTGATCTCAGTGAAACACAAGGCTGATATTGACACTGATGAGGTTTTCTGCGAGATCAAAATGATTCCTTTGAAGCCGGAGGAGTTTGACTATTGTGAAGAAGAGGAAGAAGAAGAAGAGGCGCTCTCGCTGGGCTACAGTGCTTCGGAAACTCGAGATAAACCTGCCTGCTTTGCAAAAGCATTGACCCAATCTGATGCTAATAATGGCGGCGGTTTTTCTGTTCCGAGATATTGTGCCGAAACCATTTTCCCAAGACTGGATTATTCGGCCAAACCGCCTGTCCAGATGGTTCTTGTGAAGGACGTTCATGGAAAAGTGTGGAAATTCCGGCATATATACAGGGGGACGCCGCGCCGGCACTTGCTCACGACTGGATGGAGCAGCTTTGTTAATGAGAAGAAGCTTGTGGCCGGCGATTCCGTCGTGTTCTTGAGAAGCGACAACGGCGATCTTTGCGTTGGGATTCGTCGAGCTAAGAGTGGTTCTGAGCAGTTTGCGGGCTGGAATAGTCATAAAATTTCGATCTTTGGAGGAATTTCGGTTTTCTTGAGGGCGGGCGATAAGAGGAGAGGCTTGGATTTTGATCCAGGAAGCAATGGGGTGAAGGCGAAACTAAAGGTAGATTCAGTAATGGAGGCGGCCAGCCTTGTTGCTGGAGGGAAGCCTTTTGAGGTTTGTTACTATCCGAGGAGCGGTACGCCGGAGTTTGTCGTAAGAGTGTCGGCTGTGAGAGCTTCAATGAGGGTTCAATGGTGCCCTGGTATGAGGTTTAAGATGGCTTTTGAGACCGAGGACTCTTCAAAGATAAGCTGGTTCAATGGAACAGTATCATCTGCTCAGGTTGCTGATCCTATAAGATGGCCGGGTTCCCCTTGGAGGCTGCTGGAGGTGGCATGGGATGAGCCTGATTCTCTTCAGAATGTAAAACGTGTAAGCCCGTGGCTTGTGGAACTTGTGTCAAACACATCTGCCATTGATACAGCTCCATTCTCGCCTCCACGAAAAAAGCTTCGAATGATCCCGCATCTTGATTCCCTTCCCGAAGCTCAGATTCTGAGCCATCCTTTCCCCGGAAACCCTCTCATTCCCAGTTTCCCTGCAGAAAGCATACAGGGAGCCAGGCATATTCAACAAACCCCGTCTCTACCAGAAGTCCGCTTTGCAAGTTTGAAATTTGGGCTCTTCTACTCCGGAATTCGCATGCTCAATCCCTTCACTTCGCCCCCCGTCATCCTTCCTCCGAAATCTGACTGGTTGGCACTCGGATTTTCTTCTCAAGTTCCAAGGAGTGAATGTAGCAAAGAACTGGATTCAAGCAAACCCTATGTCATGCTTTTCGGAAAGAAGGTTTTTGCGGAACCGCAGCTGTCTCTCAGCTTATGCAGCTCATCAGATGTGAATTCTGATAAGATGGCGAATGTCTCGGATGGGTCTGATTCAAGCATTAATAATCAAAAGCGCAAGAGGCCTTCATGGCGTGGTTATCAAAATGAAGATGATGTTGGATCAGAGAGTGCTCATTGCAAGTTGTTTTTGGAGTATGAGGAGGTTGGCCGCACTCTCGACCTTTCCTTATTCGACTCTTACGAGGAATTGTATGGAAGATTGGCAGAAATGTGTGGGATTGAGACGGCGGAGCTTACCGGCCGCGTTGTTTATCAGGATGGGGGTGGCACACTGAAACACGCCGAAGACGAACCTTATGGAGTGTTCATGAAGGAAGCAAGGAAGCTAACAATATCTGTGGAATCGAGTTGCTGCAAAGAGTTCTCTTGTCAGATGGGAAGCTAAAAGAGCAGTTTTGAGTACTGATGGTATTTTTATGATTCTCTATGCTAAATTCCTGGAAAGACTGATCAACATATTAGATATAGTTTATGCCCGCTATTTTGCTTTAATATTTCTTTCCTTGGTTGTAAATAGACTTTTTATTAGCACCTCCTTTTTGATTGATTGATGATGCCTT

Network for GWHGAAEX014357

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module3

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02362.20	B3	117	218	5.30E-23
PF06507.12	Auxin_resp	273	355	3.00E-31

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	B3-ARF

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009725	Biological Process	response to hormone
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding
GO:0005634	Cellular Component	nucleus

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	9.510
SRP064423	SRR2545915	Juvenile tuber	13.750
SRP108465	SRR5643513	five period of Gastrodia elata	7.030
	SRR5643514	five period of Gastrodia elata	7.270
	SRR5643515	five period of Gastrodia elata	10.890
	SRR5643524	five period of Gastrodia elata	8.750
	SRR5643525	five period of Gastrodia elata	14.290
	SRR5643528	five period of Gastrodia elata	12.550
	SRR5643658	five period of Gastrodia elata	10.630
	SRR5643659	five period of Gastrodia elata	17.570
	SRR5643660	five period of Gastrodia elata	11.870
	SRR5643661	five period of Gastrodia elata	20.440
	SRR5643662	five period of Gastrodia elata	24.520
	SRR5643663	five period of Gastrodia elata	16.370
	SRR5643664	five period of Gastrodia elata	36.150
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	10.510
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	8.670
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	10.090
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	8.240
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	6.080
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	6.550
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	14.270
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	10.330
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	9.310
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	14.100
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	6.000
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	6.000
SRP279888	Gastro	Gastrodia elata tuber	8.29
	Juven	Juvenile tuber	5.02
	Mother_Gastro	Mother tuber of Gastrodia elata	18.86
	Mother_Juven	Mother tuber of Juvenile	3.94