Detail information of GWHGAAEX014367/evm.TU.scaffold_59.124
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|159039901|ref|YP_001539154.1| | 1.00E-33 | regulator of chromosome condensation, RCC1 [Salinispora arenicola CNS-205] |
| nr | gi|672164512|ref|XP_008802135.1| | 0 | PREDICTED: uncharacterized protein LOC103716063 isoform X1 [Phoenix dactylifera] |
| Swissprot | tr|Q9FN03|UVR8_ARATH | 2.00E-44 | Ultraviolet-B receptor UVR8 |
| trEMBL | tr|F6H8Q1|F6H8Q1_VITVI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:CCB48587.1} |
| TAIR | AT3G23270 | 0 | Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000068 | 2241154 | 2260871 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX014367
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00415.17 | RCC1 | 266 | 314 | 2.50E-11 |
| PF00415.17 | RCC1 | 318 | 367 | 2.30E-09 |
| PF00415.17 | RCC1 | 372 | 421 | 5.50E-12 |
| PF00415.17 | RCC1 | 437 | 483 | 1.60E-11 |
| PF00415.17 | RCC1 | 487 | 535 | 0.0002 |
| PF00415.17 | RCC1 | 539 | 587 | 3.20E-14 |
| PF01363.20 | FYVE | 591 | 657 | 2.00E-13 |
| PF08381.10 | BRX | 899 | 949 | 8.50E-22 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0046872 | Molecular Function | metal ion binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 1.400 |
| SRR2545915 | Juvenile tuber | 0.520 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 3.790 |
| SRR5643514 | five period of Gastrodia elata | 6.050 | |
| SRR5643515 | five period of Gastrodia elata | 4.370 | |
| SRR5643524 | five period of Gastrodia elata | 5.470 | |
| SRR5643525 | five period of Gastrodia elata | 0.580 | |
| SRR5643528 | five period of Gastrodia elata | 0.750 | |
| SRR5643658 | five period of Gastrodia elata | 0.590 | |
| SRR5643659 | five period of Gastrodia elata | 0.770 | |
| SRR5643660 | five period of Gastrodia elata | 0.790 | |
| SRR5643661 | five period of Gastrodia elata | 0.830 | |
| SRR5643662 | five period of Gastrodia elata | 0.890 | |
| SRR5643663 | five period of Gastrodia elata | 0.830 | |
| SRR5643664 | five period of Gastrodia elata | 1.040 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 8.900 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 9.910 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 7.630 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 4.140 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 9.460 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 9.810 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 6.610 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 6.860 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 9.500 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 11.130 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 15.210 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 15.210 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 1.90 |
| Juven | Juvenile tuber | 1.19 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 6.19 | |
| Mother_Juven | Mother tuber of Juvenile | 4.25 |