Detail information of GWHGAAEX014369/evm.TU.scaffold_59.126
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|159039901|ref|YP_001539154.1| | 2.00E-32 | regulator of chromosome condensation, RCC1 [Salinispora arenicola CNS-205] |
| nr | gi|672164512|ref|XP_008802135.1| | 0 | PREDICTED: uncharacterized protein LOC103716063 isoform X1 [Phoenix dactylifera] |
| Swissprot | tr|Q9FN03|UVR8_ARATH | 1.00E-44 | Ultraviolet-B receptor UVR8 |
| trEMBL | tr|F6H8Q1|F6H8Q1_VITVI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:CCB48587.1} |
| TAIR | AT3G23270 | 0 | Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000068 | 2282252 | 2285289 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX014369
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module5 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00415.17 | RCC1 | 94 | 142 | 5.80E-11 |
| PF00415.17 | RCC1 | 146 | 195 | 8.20E-08 |
| PF00415.17 | RCC1 | 203 | 249 | 2.40E-11 |
| PF00415.17 | RCC1 | 265 | 311 | 5.30E-12 |
| PF00415.17 | RCC1 | 315 | 363 | 5.30E-05 |
| PF00415.17 | RCC1 | 368 | 415 | 6.90E-14 |
| PF01363.20 | FYVE | 419 | 485 | 9.50E-14 |
| PF08381.10 | BRX | 710 | 760 | 6.50E-22 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0046872 | Molecular Function | metal ion binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.000 |
| SRR2545915 | Juvenile tuber | 0.000 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 4.690 |
| SRR5643514 | five period of Gastrodia elata | 5.750 | |
| SRR5643515 | five period of Gastrodia elata | 4.470 | |
| SRR5643524 | five period of Gastrodia elata | 5.140 | |
| SRR5643525 | five period of Gastrodia elata | 2.260 | |
| SRR5643528 | five period of Gastrodia elata | 1.580 | |
| SRR5643658 | five period of Gastrodia elata | 3.280 | |
| SRR5643659 | five period of Gastrodia elata | 1.580 | |
| SRR5643660 | five period of Gastrodia elata | 1.480 | |
| SRR5643661 | five period of Gastrodia elata | 0.940 | |
| SRR5643662 | five period of Gastrodia elata | 1.030 | |
| SRR5643663 | five period of Gastrodia elata | 1.180 | |
| SRR5643664 | five period of Gastrodia elata | 0.550 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 0.620 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 2.230 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 0.740 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 0.870 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 0.000 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.000 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 0.720 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 0.000 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 0.440 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 0.000 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 0.810 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 0.810 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.78 |
| Juven | Juvenile tuber | 2.83 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 1.09 | |
| Mother_Juven | Mother tuber of Juvenile | 1.87 |