Gene detail

Detail information of GWHGAAEX014370/evm.TU.scaffold_59.127

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|319789292\|ref\|YP_004150925.1\|	7.00E-11	Ankyrin [Thermovibrio ammonificans HB-1]
nr	gi\|672123749\|ref\|XP_008785241.1\|	0	PREDICTED: probable E3 ubiquitin-protein ligase XBOS34 [Phoenix dactylifera]
Swissprot	tr\|Q7XI08\|XB34_ORYSJ	1.00E-159	Probable E3 ubiquitin-protein ligase XBOS34
trEMBL	tr\|M0SPX9\|M0SPX9_MUSAM	5.00E-176	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr4P18160_001}
TAIR	AT3G23280	2.00E-144	XB3 ortholog 5 in Arabidopsis thaliana

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000068	2287135	2301179	+

Transcript Sequence
>GWHTAAEX014370 AAAGAGATGCCAATTAAGAAATGAGATGGGTTGACGGAGGCGCTGGACGCGGTTCAGATCGTTGATAGCTTTTCTTCTCCCGGAAGCAAAAATTATTTGGGATTTTTATCTAAACTGAACGTCCCTCCTGCAAAATCAATCGTTTTGATTCTCCTCCCGCCCAGAATCCAGGAAGAGGAATAGCTGTATTCGCGTTCCTGGATTGAAGGGATCGGTCAGCTTCCTTTTCGGAGAGTTTTTAGTGGTCGATGGGTGCAAATCAATCGAAGGACGAACTGCTGTATCAGCAGGTCAACTGTGGGTATATTGAAGGCATCAAGGCTCTTCGCCGCGAAGGAGCCGGACTCGAGTGGATTGACAAGGAAGGGAAAACTCCGTTGATTATTGCGTGCATGCGACCCGATCTCCTTCATGTTGCGAAAGCCTTAATCGAAATGGGCGCGAATGTGAATGCTTACCGCCCTGGAAGTCATGCTGGAACTCCATTGCATCATGCCGCAAAAAGAGGTCTTGATAGTACTGTTATTTTACTTCTTTCACATGGAGCAAATCCTATAGTGATGAATGACGATTGTCAAACTCCTCTTGACTTGTCTAGAGCTAAAGGTTATGCCAGTGTTGTGCGTGTCATTGAGAATTCCATCTGTTTGTTTTCTGGCTGGCTAAGAGAGATTAATGGGCCAAGCATTTTGGAGGCATTTGCACCTCAGTGGGTGTCAAAGAAAATATATGCTGTTGTTTTGCCCTGCGATTTTCGTAATCCTCAAAATCCATGGAAGTTTGAGCTGGTTATTTATCCTGATCTGCAGGTTTCAGAACCTCGGACTATTATTCCTCTTTGGAAATCTCAAATCGAGGATATAAAATTCAGTCAGCCAGATCCTGCCTTGATTATTCTAGACACTACTAGAAAAGCTAGGTTTAAATTTTTATCTGCGCATGAAGGTGACAAGCAGCAGATGCAGTGGCTTTTCAATGCTTGTAGGGGCATATGCCAGCGCAACAATGCTGTAGCGCCGCCGCCGCCGCCGGAACATTGGGCAGCAGCAGGCAATCCTAACCCGGAAGATGCGCGCTTATCGATGGCCATCAACGCTTCCATCCAAACGGCCTTTGCCGAGGGCATCCCACCGCCCGATCCCACTAACGGTTGGAGGATCTCCCCGGAAAACGGCCCTCCCATTCACAATGGCTGGGGTCCATCGAACCAGACCGAGGCCGCGATCCCTGTATCCGTTCCGTCCGCTCCGCCTATTTCTGACGACGGCGCCGCCGCTGTTTACGGCGGTCTCATTCGCTATCCATCTATAGACTCCGGTCCCATCGATTTCACGGCGCCACAGATGGAAGCCAAGGATGGCGGCAGCGGCGGCGGCGGCAGCAGCAGTGCATCTTCCTTGTGTGTGATCTGCCTCGACGCTCCTGTAGAGGGTGCGTGCATTCCGTGCGGCCACATGGCTGGCTGCATGTCCTGCCTTAAAGAGATCAAGGAAAAGAAGGGCGAGTGCCCTGTCTGCCGGGCCCACATGACCCAGATTTTGAGGCTCTATGCGGTTTGATGGACGGGCGGGCCGGTCTTTAAAAACTTCATCAGCCTAATACATGAATGTAAATTCGATTTGTATGCCTATTGCTTGTTCCTCTAATTTCAGAAACTGTAAACGGCATTATTTATAGTTACCTTTGTTTCCCCCCTCAAAGCAGTTGCTGAGTTGAAAAAGGTAAAGAAAAAGGCTTCATGGAATGTCTCTCTAATGCAGTCCATCATCGCCTATTTTTTATATTTACAAATCAAGTATTCAATGGGTTAATGAAGCCTTGTGTAGCTTAAAATTGAATAGAATGATTGTAGTGTTTTTTCTTGAATGGTTTTGGATTGTTTGTATTGAAAGTTTTATATCATGTATGCAGCTTTAATAGCCCAATAGAGTCCTTCGGAATTAATATATAATGTTGGTTTAGTCGAAGGTTGGATGCTGGATATGTAAATACTTGTACATATTTGTGTTTTTATCATTTGATAGTATTTTAGATTATTGCACTTCTTAATGAAATTTTAATGATTAACAA

Network for GWHGAAEX014370

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00023.29	Ank	40	69	0.00079
PF00023.29	Ank	78	105	0.0045
PF13920.5	zf-C3HC4_3	383	429	1.20E-12

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	RING

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	32.250
SRP064423	SRR2545915	Juvenile tuber	24.900
SRP108465	SRR5643513	five period of Gastrodia elata	36.000
	SRR5643514	five period of Gastrodia elata	30.820
	SRR5643515	five period of Gastrodia elata	39.470
	SRR5643524	five period of Gastrodia elata	34.280
	SRR5643525	five period of Gastrodia elata	82.440
	SRR5643528	five period of Gastrodia elata	89.230
	SRR5643658	five period of Gastrodia elata	86.300
	SRR5643659	five period of Gastrodia elata	33.240
	SRR5643660	five period of Gastrodia elata	36.250
	SRR5643661	five period of Gastrodia elata	39.520
	SRR5643662	five period of Gastrodia elata	42.600
	SRR5643663	five period of Gastrodia elata	34.210
	SRR5643664	five period of Gastrodia elata	40.260
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	34.140
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	37.910
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	35.750
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	32.750
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	32.100
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	34.500
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	33.580
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	30.890
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	32.930
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	36.070
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	39.670
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	39.670
SRP279888	Gastro	Gastrodia elata tuber	43.13
	Juven	Juvenile tuber	32.71
	Mother_Gastro	Mother tuber of Gastrodia elata	69.23
	Mother_Juven	Mother tuber of Juvenile	43.23