Detail information of GWHGAAEX014371/evm.TU.scaffold_59.128
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|159897565|ref|YP_001543812.1| | 2.00E-49 | threonine aldolase [Herpetosiphon aurantiacus DSM 785] |
| KOG | KOG1368 | 1.00E-72 | Threonine aldolase |
| nr | gi|672164523|ref|XP_008802141.1| | 1.60E-90 | PREDICTED: probable low-specificity L-threonine aldolase 1 isoform X2 [Phoenix dactylifera] |
| Swissprot | tr|Q9FPH3|THA2_ARATH | 1.00E-76 | Probable low-specificity L-threonine aldolase 2 |
| trEMBL | tr|M0S7B1|M0S7B1_MUSAM | 4.00E-84 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr2P12200_001} |
| TAIR | AT3G04520 | 1.00E-72 | threonine aldolase 2 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000068 | 2323795 | 2345323 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX014371
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module1 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01212.20 | Beta_elim_lyase | 74 | 221 | 3.90E-41 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006520 | Biological Process | cellular amino acid metabolic process |
| GO:0016829 | Molecular Function | lyase activity |
| GO:0003824 | Molecular Function | catalytic activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 33.980 |
| SRR2545915 | Juvenile tuber | 9.050 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 16.660 |
| SRR5643514 | five period of Gastrodia elata | 14.120 | |
| SRR5643515 | five period of Gastrodia elata | 11.690 | |
| SRR5643524 | five period of Gastrodia elata | 11.150 | |
| SRR5643525 | five period of Gastrodia elata | 144.300 | |
| SRR5643528 | five period of Gastrodia elata | 188.110 | |
| SRR5643658 | five period of Gastrodia elata | 211.350 | |
| SRR5643659 | five period of Gastrodia elata | 1.610 | |
| SRR5643660 | five period of Gastrodia elata | 2.450 | |
| SRR5643661 | five period of Gastrodia elata | 14.010 | |
| SRR5643662 | five period of Gastrodia elata | 3.070 | |
| SRR5643663 | five period of Gastrodia elata | 1.420 | |
| SRR5643664 | five period of Gastrodia elata | 3.260 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 5.930 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 2.580 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 6.430 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 18.650 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 12.140 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 15.340 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 12.840 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 15.500 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 14.450 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 11.980 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 5.710 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 5.710 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 4.51 |
| Juven | Juvenile tuber | 6.87 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 29.57 | |
| Mother_Juven | Mother tuber of Juvenile | 27.19 |