Detail information of GWHGAAEX014371/evm.TU.scaffold_59.128


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|159897565|ref|YP_001543812.1|2.00E-49threonine aldolase [Herpetosiphon aurantiacus DSM 785]
KOGKOG13681.00E-72Threonine aldolase
nrgi|672164523|ref|XP_008802141.1|1.60E-90PREDICTED: probable low-specificity L-threonine aldolase 1 isoform X2 [Phoenix dactylifera]
Swissprottr|Q9FPH3|THA2_ARATH1.00E-76Probable low-specificity L-threonine aldolase 2
trEMBLtr|M0S7B1|M0S7B1_MUSAM4.00E-84Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr2P12200_001}
TAIRAT3G045201.00E-72threonine aldolase 2

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000006823237952345323+
Transcript Sequence

Network for GWHGAAEX014371

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module1

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01212.20Beta_elim_lyase742213.90E-41
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01620ltaE Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Microbial metabolism in diverse environmentsmap01120
Biosynthesis of antibioticsmap01130
Biosynthesis of amino acidsmap01230
Pyrimidine metabolismmap00240

Gene Ontology

GO term OntologyName
GO:0006520Biological Processcellular amino acid metabolic process
GO:0016829Molecular Functionlyase activity
GO:0003824Molecular Functioncatalytic activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms33.980
SRR2545915Juvenile tuber9.050
SRP108465SRR5643513five period of Gastrodia elata16.660
SRR5643514five period of Gastrodia elata14.120
SRR5643515five period of Gastrodia elata11.690
SRR5643524five period of Gastrodia elata11.150
SRR5643525five period of Gastrodia elata144.300
SRR5643528five period of Gastrodia elata188.110
SRR5643658five period of Gastrodia elata211.350
SRR5643659five period of Gastrodia elata1.610
SRR5643660five period of Gastrodia elata2.450
SRR5643661five period of Gastrodia elata14.010
SRR5643662five period of Gastrodia elata3.070
SRR5643663five period of Gastrodia elata1.420
SRR5643664five period of Gastrodia elata3.260
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_15.930
SRR6049655Rhizomagastrodiae_C368-T10_good_12.580
SRR6049656Rhizomagastrodiae_C368-T07_good_16.430
SRR6049657Rhizomagastrodiae_C368-T07_good_118.650
SRR6049658Rhizomagastrodiae_C368-T04_good_112.140
SRR6049659Rhizomagastrodiae_C368-T04_good_115.340
SRR6049660Rhizomagastrodiae_C368-T01_good_112.840
SRR6049661Rhizomagastrodiae_C368-T04_good_115.500
SRR6049662Rhizomagastrodiae_C368-T01_good_114.450
SRR6049663Rhizomagastrodiae_C368-T01_good_111.980
SRR6049664Rhizomagastrodiae_C368-T10_good_15.710
SRR6049665Rhizomagastrodiae_C368-T10_good_15.710
SRP279888GastroGastrodia elata tuber 4.51
JuvenJuvenile tuber6.87
Mother_GastroMother tuber of Gastrodia elata 29.57
Mother_JuvenMother tuber of Juvenile 27.19