Gene detail

Detail information of GWHGAAEX014375/evm.TU.scaffold_59.136

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|383762223\|ref\|YP_005441205.1\|	1.00E-31	cytochrome P450 [Caldilinea aerophila DSM 14535 = NBRC 104270]
KOG	KOG0157	1.00E-131	Cytochrome P450 CYP4/CYP19/CYP26 subfamilies
nr	gi\|672162861\|ref\|XP_008801256.1\|	1.76E-167	PREDICTED: cytochrome P450 86B1-like [Phoenix dactylifera]
Swissprot	tr\|Q9FVS9\|C96AF_ARATH	3.00E-117	Alkane hydroxylase MAH1 {ECO:0000303\|PubMed:17905869}
trEMBL	tr\|I1P7E7\|I1P7E7_ORYGL	6.00E-162	Uncharacterized protein {ECO:0000313\|EnsemblPlants:ORGLA03G0029300.1}
TAIR	AT2G23180	1.00E-131	cytochrome P450, family 96, subfamily A, polypeptide 1

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000068	2578818	2580383	+

Transcript Sequence
>GWHTAAEX014375 CATTTATTAAACTAATTCTACACCTTTAAAAATGCTTATAAAGCTACATGCAGCAAAACAGAAATTAGTTCAATCTGCAGAATTTGAATTCCTTCAAAACCGATGGAGGTGGAGAGAATTGCCTGGCTTCTATGCCCTAAACTCCTCCTCTGTTTTTCTCTGCTCCTCCTCCTCCTCCGCTGCTGTCGCCGGACCTCCGCCGCCAAGCTCACCAACTGGCCTCTCTTGGGCATGCTTCCTGCCCTTGCTGTCAATCTTCACCGCTACCTCGACTGGACCACCTCCATCATGCGCTCCTCCGGCCTCACCTTCTTCTTTTACGGTCCCTGGCTCTCCCAGATGCATATGCTTCTCACCTGCGATCCCGCCAACGCCCACCACATCTTCAACACCAACTTCTCCAACTACCCCAAAGGTCAGCAATTCTCCGAGACCTTCAGCATTCTCGGTGACGCAATCGTCGCAGATGGCAACGCCTGGCGAGTACAGCGTCACCTGGCCCAGACTCTTTTTGTACATCCTAAGTTCGTGGCATTCGTTGGATGTTGCAGCCGCGATAAAGTCGACAACTTTCTCCTCCCGTTGCTCCAGCAAGCCGCAGAGCGGGAAAAGGCAGTCGACCTTCAGGACGTGTTCTTGAGATTTTCTTTCGACGTCACTTGCAAGGTCGTGTTCGGCACCGACTCCGCCGCTCTCTCCCCTGATTTCCCCGCCGTTCCCTTCTCTGTGGCCATGGACGATACCTTAAATGCAATCTGGATGCGCCACGTTGTTCCGGGATCCTGGTGGAGGCTCATGCGACGCCTCAATTTGGGATGGGAGAAGCGGCTTCGCCGAGCCTGGCTTGTATTCGATGATTTCATTGAAGAAAATATTAGGAAGATAAAGAATGAGGCGAGAGACTGTTCCAATGTCAGCTTCCTTGGTTTGTACATCAAAGACGATACTTTGAAGGTTGGCGGAGACAAAAGCGACAAATTTCTGAGGGGTTTGGCGCTGAGCCTCATGATAGCCGGAAGAGACACGGTCGGGATGGCCCTGGCTTGGTTCTTCTTCCTCCTCTGCGTGAACCCGGATGAGCAAGACAAGATTTTTGATGAAGTAAAGCGAGGAGAGGGACACGTGTACCTCAAGGCAGGTCTCTGCGAGGCGCTGAGGCTCTACCCGCCGGTGCCCTTCGAGGAGAAGGGTGTAATGGAGCCGGACACGCTTCCCAGCGGAGAGAGGGTGGAGCCGGGGATGCAGATTCTCTTCTCTGTTTATGCAATGGCCAGGATGGAACCGATTTGGGGGAAGGGTTGCTCGGAGTTTAAACCGTCCCGGTGGATAACAGAAGAGGGGAAGATGCGGTATGAACCGAGTTACAAGTTCATGTCCTTTATCTGTGGGCCAAGGACTTGCTTAGGAAAAGATATTGCCTTTGAGATCTTGCAGCAGGCGGCGGCGGCGGTTGTGAAAGAGTTCAGGTTGGAGATAGTGGAGGGGCATCTTGTGGAGCCCAAGCTATCGATCATACTACAGATGAGGAATGGGCTCAAGGTGAGAGTAGAGAGGAGGAAGCCATGA

Network for GWHGAAEX014375

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00067.21	p450	38	472	2.10E-46

Protein Sequence

Gene family

Gene family	subfamily
Cytochrome P450 Family	CYP96A1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0055114	Biological Process	oxidation-reduction process
GO:0020037	Molecular Function	heme binding
GO:0016705	Molecular Function	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0005506	Molecular Function	iron ion binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	1.160
SRP064423	SRR2545915	Juvenile tuber	3.280
SRP108465	SRR5643513	five period of Gastrodia elata	0.830
	SRR5643514	five period of Gastrodia elata	0.580
	SRR5643515	five period of Gastrodia elata	0.870
	SRR5643524	five period of Gastrodia elata	0.520
	SRR5643525	five period of Gastrodia elata	5.240
	SRR5643528	five period of Gastrodia elata	8.780
	SRR5643658	five period of Gastrodia elata	12.910
	SRR5643659	five period of Gastrodia elata	0.380
	SRR5643660	five period of Gastrodia elata	0.140
	SRR5643661	five period of Gastrodia elata	0.990
	SRR5643662	five period of Gastrodia elata	0.510
	SRR5643663	five period of Gastrodia elata	0.670
	SRR5643664	five period of Gastrodia elata	0.430
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	0.180
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	0.720
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	0.260
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	0.140
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	0.090
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	0.150
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	0.230
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	0.090
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	0.000
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	0.070
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	0.170
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	0.170
SRP279888	Gastro	Gastrodia elata tuber	1.72
	Juven	Juvenile tuber	0.15
	Mother_Gastro	Mother tuber of Gastrodia elata	4.36
	Mother_Juven	Mother tuber of Juvenile	15.51