Gene detail

Detail information of GWHGAAEX014376/evm.TU.scaffold_59.138

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG2308	Phosphatidic acid-preferring phospholipase A1, contains DDHD domain
nr	gi\|672173685\|ref\|XP_008806976.1\|	PREDICTED: phospholipase SGR2 [Phoenix dactylifera]
Swissprot	tr\|Q8W5R2\|SHGR2_ARATH	Phospholipase SGR2
trEMBL	tr\|M0RH34\|M0RH34_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr10P10580_001}
TAIR	AT1G31480	shoot gravitropism 2 (SGR2)

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000068	2631013	2743032	+

Transcript Sequence
>GWHTAAEX014376 ATGAGACAACACAGCACCATCGTGTCCGCTTCTCTCCCGCTCCAACGAAGAGCCTTGGCGCTCGACAGAAGACTCCCTCGAAACCCAAACTCTATCTTTCCGTCGAGGATCTACAAAATGAGTAATTCTGACATTCATTCTATTGAGAAGCATGAGAATAAAGCAATGCCCTCAGCTAAGGCAGCTGGTTTTAATCAAGTAGAGACTTCTCCAGATTTGTTAAAGAACACACCTTCAAACATAGCGAGGTTGGAGGATCTGATTGAACAGTGCAAGGGCCGCCCTAAGTACCTTGCTCAGACAAAGAGTTCTCTTGATGGTGAAGATGTTCGTTGGTACTTCTGCAAAGTTCCTCTTGCTAAAAGAGACCTTGCAGCTTCTATTCCCCGCACGGATGTTGTGGGTAAAAGTGATTATTTCAGGTTTAGCATACGAGATTCGCTTGCTCTTGAGGCTTCTTTCTTACAGAGAGAAGAGGACATGCTCTCATATTGGTGGAAGGAGTTTGCAGAGTGTAGTGAAGGTCCAAATGGATCTTTTAGAACTGGAGACTCTCTGATCAGTGACGAATGGGAAAAACTATATGCTGTTGAAGAAGAGAGAGTTGGCGTACCAGTAAAAGGAGGCCTTTATGAGGTTGATTTAACCAGACGACACTGTTTTCCTGTGTATTGGAATGGAGAAAACCGTAGGGTTTTAAGAGGCCACTGGTTTGCTCGAAAAGGGGGGATAGATTGGCTTCCTGTACGTGAAGACATTTCAGAGCAGCTGGAGTTGGCTTACCGCTGTAAGGTTTGGCACAGGAGGACATTTCAGCTTTCAGGTCTTTTTGCTGCACGTGTGGATTTGCAAGGAACAACACAGGGATTGCATGCTCTTTTCACAGGGGAGGATGATTCATGGGAGGCTTTGTTAGTGTCTGACACCTCTGGTTTTGGACAGGGGAATAGAATTAAACTTAGGCGTGGGTTCCAAACATCTGGTTCTCTAAAGCCAACTCAGGAAGAACTGCGCCAACAAAAGGAAGAAAAAATGGATGACTATTGTTCTCAGGTGCCAGTTGGTCATCTAGTCTTTATGGTACATGGTATTGGGCAAAGGCTGGAAAAAGCAAATTTGGTTGATGATGTTGGTGATTTTCGTCGGGTAGCTTCCAGTCTTGCTGAAAGACATTTAACTCCATACCAGAGATGCACCCAAAGGGTGCTGTTCATCCCTTGTCAGTGGAGAAAAGGATTGAAGCTCAGTGGCGAAAGTGCTGTGGATAAAATTACATTGGACGGTGTTCATGGTCTTCGAGTTACCCTAAGTGCTACAGCTCATGATGTTCTATATTATATGAGTCCTATATATTGCCAGTATATTGTAGATTCGGTATCCTATCAGTTAAATAAACTGTATGCAAAGTTCTTAAAGAGAAATCCATACTACAATGGAAAGGTTTCGTTATATGGCCATTCATTAGGAAGTGTTCTATCTTATGACATTCTTTGTCACCAAGAATGTTCCTATATTTCTATAGATTCTGCTTGCATGAGAAATAGTGCTGAACTGGAAGCACAAAAAGATGTGCCCTGCCCTTCCTTTAATGATGATGAAGATGCTGCTTCACAAGATGTTGATGAAATCAATTTGTCTGATGGCGCCTTTGGGCAATTGGCATGCTGCACCGAAGTTCCCTTCCCTGCAGAAAACTTTATTGATGATGGGTCAAAGTCTGTTGGTTTTTCGAATGCTAATGCTGAATCTTCTGGTTTTGTACGATTACCTTCTGACAAGGAGCAATGCAATAGTACACAAACATTGGATGTTGTTGAGAATTCCTATATGAAATCAAGGCCAAATTCTATTGCAGAAATGGGTTCAGATTTTGATACCATTGAAGATAATTCTGGGGAAATTGAAGCAAAAATTGCAGATCAGTTTGTTGGAGATACTACTACCAAGGACCATCTGATCTGCTTGCTGAGAGAAGAGGTCAAATTTCTTCAAACAAGGATTGCAGAACTTGAGCAACAAACTAAACACCCAAGATCATCGTCTACAAATAGCGGAGATATCAAAAATGAAAAATCTACTTTGAATGGAAATAAAGATTATTGTTGCAAAGATCAACCATCCTTGGAAAAGTCTGTGCAAGATGTCTCAAAAAAGAGATACACACCTTATATCAGATATACACAACTTAATTTTAAGGTTGATACATTTTTTGCTGTTGGATCGCCGCTTGGTGTCTTCCTTGCTCTTCGTAACATCCGTATAGGCATAGGTAAGGGACAAGATTATTGGCAAGACGAGACTATACTTGAAGAGTTACCATGTTGCCGACAAATGTTCAATATCTTTCATCCTTTTGATCCAGTTGCATATAGAGTAGAACCACTTATTTGCAAAGAATATATCAGCAAGCGCCCTGTTATTATACCATATCATCGGGGAGGAAAGAGGTTGTATATAGGACTTCAGGAATTCACCGAGGATATATCAGCCCGTACACAAGCTATGATGAAATGCTTGAGCTCGATAAAGGCTAAAATGCTTAATGTGTTTCATTCAAGAAGTGAAGATATTTTAGAAGCGGAAGAAAATCACGAGAAAGAACAAACATATGGCTCTCTCATGATTGAAAGTTTGACTGGTTGCATTGATGGCAGAGTTGATCACGTCCTTCAGGATAAAACATTTCGGCATGCATATATTTCAGCTTTAGGGTCTCACACAAATTATTGGCGGGATGCCGATACAGCACTGTTCATTCTCAAGCACCTGTACCGCGACATACCCGAGGAGGACCCTCGCGAAGGAACGAGTTCTGAAATCCTAAAAAATTACGAGGATATTCTGGACGAAGACTTTCCCTTGACTTTCTCAGATCATCTGTGGATCAGAGATTTTTCTAGAAAGGCGAAGCAAGCCATGCAATCAACATGATCTTCACTTGAATAATAATAATGTTCTTCAGCAGAAGCAACCGCTCGTTCGAGTGATCAAAGAGAGGTGTGATTGCACTTGCTTTAAATTAAGAGATGTGTTGTAATTTATGCAGTAAATATGCAATGTGAATATTTAATGGGAGCACATGTTTTTGCCAGGATTTTTTTCTTGTTTACAGCTATTATAGTTAATTTTATTATCGATAAGCAGTAAATATGCAATCACTGCTTTATTTGTCGACCAAACTCAAAATTATATGGGCCGAGAAACTGTAAGATATTTCAGAGTAGTACTCTATGCTGTACAGCTTTTAAAAAGTCGATTTTTAATTAAGGCTATTATGATATGGGGTTTGCTCTTAACCCCTTAGATACTACAGATAAGATATTAATTGAGTTTGCAACTGCTTTTGG

Network for GWHGAAEX014376

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02862.16	DDHD	729	924	3.20E-43

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0046872	Molecular Function	metal ion binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	37.400
SRP064423	SRR2545915	Juvenile tuber	33.020
SRP108465	SRR5643513	five period of Gastrodia elata	12.170
	SRR5643514	five period of Gastrodia elata	10.620
	SRR5643515	five period of Gastrodia elata	8.590
	SRR5643524	five period of Gastrodia elata	11.210
	SRR5643525	five period of Gastrodia elata	11.890
	SRR5643528	five period of Gastrodia elata	11.400
	SRR5643658	five period of Gastrodia elata	11.330
	SRR5643659	five period of Gastrodia elata	9.570
	SRR5643660	five period of Gastrodia elata	11.730
	SRR5643661	five period of Gastrodia elata	10.730
	SRR5643662	five period of Gastrodia elata	11.410
	SRR5643663	five period of Gastrodia elata	11.160
	SRR5643664	five period of Gastrodia elata	11.190
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	10.830
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	11.140
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	10.180
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	13.040
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	10.300
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	11.510
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	11.680
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	10.610
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	9.340
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	9.490
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	11.690
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	11.690
SRP279888	Gastro	Gastrodia elata tuber	10.06
	Juven	Juvenile tuber	14.46
	Mother_Gastro	Mother tuber of Gastrodia elata	12.48
	Mother_Juven	Mother tuber of Juvenile	14.62