Detail information of GWHGAAEX014378/evm.TU.scaffold_59.142
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|170781032|ref|YP_001709364.1| | 6.00E-90 | peptidase [Clavibacter michiganensis subsp. sepedonicus] |
| nr | gi|672165081|ref|XP_008802434.1| | 0 | PREDICTED: subtilisin-like protease SDD1 [Phoenix dactylifera] |
| Swissprot | tr|O64495|SDD1_ARATH | 0 | Subtilisin-like protease SDD1 {ECO:0000303|PubMed:10809670} (Precursor) |
| trEMBL | tr|A0A072URI6|A0A072URI6_MEDTR | 0 | Subtilisin-like serine protease {ECO:0000313|EMBL:KEH31683.1} |
| TAIR | AT1G04110 | 0 | Subtilase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000068 | 2773529 | 2776327 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX014378
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF05922.15 | Inhibitor_I9 | 70 | 150 | 9.40E-10 |
| PF00082.21 | Peptidase_S8 | 173 | 614 | 1.50E-46 |
| PF02225.21 | PA | 415 | 486 | 2.30E-09 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006508 | Biological Process | proteolysis |
| GO:0004252 | Molecular Function | serine-type endopeptidase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.930 |
| SRR2545915 | Juvenile tuber | 10.360 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 28.210 |
| SRR5643514 | five period of Gastrodia elata | 65.320 | |
| SRR5643515 | five period of Gastrodia elata | 60.190 | |
| SRR5643524 | five period of Gastrodia elata | 109.180 | |
| SRR5643525 | five period of Gastrodia elata | 0.100 | |
| SRR5643528 | five period of Gastrodia elata | 0.080 | |
| SRR5643658 | five period of Gastrodia elata | 0.060 | |
| SRR5643659 | five period of Gastrodia elata | 1.690 | |
| SRR5643660 | five period of Gastrodia elata | 1.110 | |
| SRR5643661 | five period of Gastrodia elata | 0.910 | |
| SRR5643662 | five period of Gastrodia elata | 1.810 | |
| SRR5643663 | five period of Gastrodia elata | 1.110 | |
| SRR5643664 | five period of Gastrodia elata | 1.550 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 50.560 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 45.650 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 68.120 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 63.840 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 16.940 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 12.500 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 36.820 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 62.110 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 49.530 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 17.710 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 67.530 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 67.530 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.63 |
| Juven | Juvenile tuber | 0.58 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.95 | |
| Mother_Juven | Mother tuber of Juvenile | 0.71 |