Detail information of GWHGAAEX014384/evm.TU.scaffold_59.148
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|152966759|ref|YP_001362543.1| | 4.00E-15 | naringenin-chalcone synthase [Kineococcus radiotolerans SRS30216 = ATCC BAA-149] |
| nr | gi|743779796|ref|XP_010920343.1| | 0 | PREDICTED: LOW QUALITY PROTEIN: 3-ketoacyl-CoA synthase 12-like [Elaeis guineensis] |
| Swissprot | tr|Q9LQP8|KCS3_ARATH | 0 | 3-ketoacyl-CoA synthase 3 (Precursor) |
| trEMBL | tr|F2EHR8|F2EHR8_HORVD | 0 | 3-ketoacyl-CoA synthase {ECO:0000256|PIRNR:PIRNR036417} |
| TAIR | AT1G07720 | 0 | 3-ketoacyl-CoA synthase 3 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000068 | 2889163 | 2891141 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX014384
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF08392.11 | FAE1_CUT1_RppA | 32 | 315 | 4.80E-110 |
| PF08541.9 | ACP_syn_III_C | 334 | 414 | 2.70E-12 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K15397 | KCS | Metabolic pathways | map01100 |
| Biosynthesis of secondary metabolites | map01110 | ||
| Fatty acid elongation | map00062 | ||
| Plant-pathogen interaction | map04626 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006633 | Biological Process | fatty acid biosynthetic process |
| GO:0003824 | Molecular Function | catalytic activity |
| GO:0016747 | Molecular Function | transferase activity, transferring acyl groups other than amino-acyl groups |
| GO:0016020 | Cellular Component | membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 1.050 |
| SRR2545915 | Juvenile tuber | 1.790 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 8.210 |
| SRR5643514 | five period of Gastrodia elata | 4.580 | |
| SRR5643515 | five period of Gastrodia elata | 6.650 | |
| SRR5643524 | five period of Gastrodia elata | 5.660 | |
| SRR5643525 | five period of Gastrodia elata | 0.570 | |
| SRR5643528 | five period of Gastrodia elata | 0.480 | |
| SRR5643658 | five period of Gastrodia elata | 0.300 | |
| SRR5643659 | five period of Gastrodia elata | 2.280 | |
| SRR5643660 | five period of Gastrodia elata | 1.170 | |
| SRR5643661 | five period of Gastrodia elata | 2.530 | |
| SRR5643662 | five period of Gastrodia elata | 1.840 | |
| SRR5643663 | five period of Gastrodia elata | 1.440 | |
| SRR5643664 | five period of Gastrodia elata | 1.350 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 2.910 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 6.630 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 4.110 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 4.120 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 3.610 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 1.680 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 2.420 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 7.290 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 6.100 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 1.960 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 4.530 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 4.530 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.84 |
| Juven | Juvenile tuber | 0.84 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 1.11 | |
| Mother_Juven | Mother tuber of Juvenile | 1.74 |