Gene detail

Detail information of GWHGAAEX014389/evm.TU.scaffold_59.154

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG4362	7.00E-106	Transcriptional regulator BRCA1
nr	gi\|116311082\|emb\|CAH68012.1\|	4.95E-158	OSIGBa0157K09-H0214G12.23 [Oryza sativa Indica Group]
Swissprot	tr\|Q8RXD4\|BRCA1_ARATH	1.00E-91	Protein BREAST CANCER SUSCEPTIBILITY 1 homolog
trEMBL	tr\|I1PMZ4\|I1PMZ4_ORYGL	1.00E-158	Uncharacterized protein {ECO:0000313\|EnsemblPlants:ORGLA04G0156300.1}
TAIR	AT1G04020	7.00E-106	breast cancer associated RING 1

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000068	3000562	3039910	+

Transcript Sequence
>GWHTAAEX014389 CTCCAATGCAGCCCAAATCACAATCCAACACGCGGGAAAACTGAAAAGAGCTGGCCTCCCGCGCGCGGTCGCGCCGTCATTTTTTCTAGATTCGCTTCAACTGCAGATCACATTGGAGACGAACCGACCTAGGAGGAGTATTTAAGCTGTGAAAATCGTGCTCTGGCCCGTCTTCAAGTTAAAAGTGCCTGGAACGGAAAACAGGTGTCGAGAAATGGCGGATTCCGAGAGTATCAGTCGAATGCTCAACCCGTTTGTCCTCAGTCTCAGGAAAATGGAGCTGGAGCTCAACTGTCCACTTTGCTTGAAGCTCTTAAGCCAACCAGTATTACTGCCGTGCGATCATATTTTGTGCAGTCGTTGTAGCGGTATCTCAACAAATGATAAATTCAACTGCCCAGATTGCAGATTACCATATGAACTTAAAGATTTGAGATCTGCCAAGCATATTGAAAAATTTTGTACTAATTACCAACACATGAGTTCTGCTATATCAACTTTGCTGCAAGATTTTGAATTATCTTTCACTAGAACTTCCTTCCCATGCAATAAGCAAGCCGAGAAGAAACATGCACATATTACCGAAGATGAAAGTTTTGTTGATCAAAGACAACTGAGTCCTCCAATTGATAATTTTAAGGAATCTGATAGTGATAGTTGGGGAAAAGAAGCACAATTTGGTGCAAAGAGGAAGTTTGCAGATATATTTACAGCGGTAGGGCCCAACTGTGACACTAAGCTTGCAAAGTTACATGATTCTAATGAGTCCAGGAAACACTTAGATGGAAGTGCCATTGAGACTTGTGTATTCTGCCATTCTTTTAGAACTACTGAGGCATCTGGAGATATGCTGCATTATTTGAATGAAAAACCTGTGTCAGGAGATCAAGTTTTACAGCCAAATGTCATACATGTGCATCGTAAATGCATAGAATGGGCTCCTCAGGTATATTATTCAGGTGAGACTGCTGTGAATTTGGAGGCTGAGATTACGCGTTCTTCCAAGATTAAATGTTGCAGTTGCGGCTTGAAGGGGGCTGCTCTGGGCTGCTATATAAAAAACTGTAGGAGAAGCTTCCATGTTCCATGTGCATATAAGATTTTAGAATGTCGTTGGGACACTGATAACTATCTTGTGCTATGCCCTGTTCATGCTTCATTCAAGCTACCTTGTGATAAATTGAAGCCTAAGAAGTCCAAGAATGCATATGTCACAATCACCAGGGAGGCTTCTGTTTTATCAGAATATGATGGCTTGTCTACAGAGAAAAAGCGACATGGGGATTGGATGTCTTCATTTAGTGTTTGCAAAGACTGGTTGATTTGTGGATCTGGTCTTTCAAAGGAGGATAAGGTTTGCTTGGACTATTTTGCTAAAATGAGTGGCTTGGTTGTAACTTACCAATGGAAGCACAATGTGACCCATGTCATTGCTGCTACAGATGAGAGTGGTGCCTGCATTAGAACAATGAAATATCTCATGGCTATTCTGAGTGGTAGATGGGTTCTAAATATGAGATGGATCAGAGCATGCCTTGAAGTCAAACAACTCGTTCCAGAAGAACACTTTGAGATCTCTCATGATATTCACGGATGCTTCGATGGCCCAAAAACTGGAAGACTTCAAGCACTGCAAAAGGCTCCAAAGTTGTTTGACAAATTAGCTTTCCACTTTTGCGGCTTCACTGAGTCATCCTATCAATCCCATCTGGAAAGCCTTGCAGCTGCTGCTGGAGGCAAGCTAGTGTGCGAGTATGAGCTGCACAAACTCAAGGCTAAAAAGACATTCATTGTTTACTGTGTCGAGCCTCCAAATGACCGTGGTTCTGCAGAATTTAAAGAGGTGTTGCTGGAAAGGATCGACGCTGCAGAAACGCTGGCTGCAAAGGCAGGAGGAACTGCAGTTCGCCATACAGTATTCCTCAATGCTATTGCTGCTCATGATCTGAATATGTTGCCAGAGAAATTGTGATCGGAGTCTGTCTATAGATGCTTCTGGATTGTAAATTGTTGGAACCATAATCTCTTGGATTAGTTCTCTTTTAGTTCCCTGCATTTACAGCTAGGAAAATCTTCAAGAGCATTATTACCAGGGGCATAAAAAGGGTTGTCTTATTGATATTGGTAAAACCTTGAGTTAGAGGGAAGTATGATTAAAGGTGATTAAACTGTATCATGGTTCAATTAAGGGTTGGATTCAGATAATTATAGTTGTTTTAAACGTTAATTTTAATGCTGTATTGATTGCTGTTGTGAAGTTGTGTTTTTCAGAATATAATCGTTAAGTTGCTTTTCATAATTTAAAATAATATTAATGAAAAATTATATTGAAGTA

Network for GWHGAAEX014389

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13920.5	zf-C3HC4_3	25	69	1.70E-07
PF13771.5	zf-HC5HC2H	235	313	6.20E-09

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	RING

KEGG pathway

KO	Enzyme	pathway	mapID
K10683	BARD1	Homologous recombination	map03440

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	21.070
SRP064423	SRR2545915	Juvenile tuber	32.390
SRP108465	SRR5643513	five period of Gastrodia elata	22.300
	SRR5643514	five period of Gastrodia elata	24.120
	SRR5643515	five period of Gastrodia elata	22.220
	SRR5643524	five period of Gastrodia elata	21.980
	SRR5643525	five period of Gastrodia elata	12.090
	SRR5643528	five period of Gastrodia elata	13.570
	SRR5643658	five period of Gastrodia elata	15.590
	SRR5643659	five period of Gastrodia elata	20.150
	SRR5643660	five period of Gastrodia elata	19.390
	SRR5643661	five period of Gastrodia elata	24.760
	SRR5643662	five period of Gastrodia elata	16.690
	SRR5643663	five period of Gastrodia elata	20.050
	SRR5643664	five period of Gastrodia elata	17.810
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	25.530
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	23.950
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	26.240
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	25.600
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	26.090
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	27.850
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	27.780
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	30.520
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	33.850
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	29.570
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	31.700
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	31.700
SRP279888	Gastro	Gastrodia elata tuber	18.36
	Juven	Juvenile tuber	19.71
	Mother_Gastro	Mother tuber of Gastrodia elata	16.46
	Mother_Juven	Mother tuber of Juvenile	16.12