Detail information of GWHGAAEX014392/evm.TU.scaffold_59.157
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|343085920|ref|YP_004775215.1| | 5.00E-57 | RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745] |
| nr | gi|743779675|ref|XP_010920309.1| | 0 | PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Elaeis guineensis] |
| Swissprot | tr|Q8VZG8|Y4885_ARATH | 0 | Probable LRR receptor-like serine/threonine-protein kinase At4g08850 (Precursor) |
| trEMBL | tr|K4A4Z9|K4A4Z9_SETIT | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:Si033953m} |
| TAIR | AT1G35710 | 0 | Protein kinase family protein with leucine-rich repeat domain |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000068 | 3063765 | 3067829 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX014392
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF08263.11 | LRRNT_2 | 25 | 62 | 5.60E-07 |
| PF13855.5 | LRR_8 | 186 | 247 | 7.80E-08 |
| PF00560.32 | LRR_1 | 260 | 282 | 0.61 |
| PF13855.5 | LRR_8 | 405 | 464 | 4.50E-07 |
| PF00069.24 | Pkinase | 906 | 1149 | 1.10E-44 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | RLK-Pelle_LRR-XI-1 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006468 | Biological Process | protein phosphorylation |
| GO:0005524 | Molecular Function | ATP binding |
| GO:0005515 | Molecular Function | protein binding |
| GO:0004672 | Molecular Function | protein kinase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 3.360 |
| SRR2545915 | Juvenile tuber | 6.110 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 28.310 |
| SRR5643514 | five period of Gastrodia elata | 14.130 | |
| SRR5643515 | five period of Gastrodia elata | 27.360 | |
| SRR5643524 | five period of Gastrodia elata | 22.240 | |
| SRR5643525 | five period of Gastrodia elata | 11.810 | |
| SRR5643528 | five period of Gastrodia elata | 13.420 | |
| SRR5643658 | five period of Gastrodia elata | 8.420 | |
| SRR5643659 | five period of Gastrodia elata | 8.560 | |
| SRR5643660 | five period of Gastrodia elata | 6.890 | |
| SRR5643661 | five period of Gastrodia elata | 11.850 | |
| SRR5643662 | five period of Gastrodia elata | 14.320 | |
| SRR5643663 | five period of Gastrodia elata | 10.110 | |
| SRR5643664 | five period of Gastrodia elata | 4.110 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 27.770 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 21.750 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 29.080 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 21.250 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 22.370 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 21.120 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 41.240 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 34.110 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 31.730 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 41.250 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 22.740 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 22.740 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 10.75 |
| Juven | Juvenile tuber | 7.79 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 29.48 | |
| Mother_Juven | Mother tuber of Juvenile | 11.15 |