Detail information of GWHGAAEX014393/evm.TU.scaffold_59.158
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG1670 | 3.00E-85 | Translation initiation factor 4F, cap-binding subunit (eIF-4E) and related cap-binding proteins |
| nr | gi|743779668|ref|XP_010920306.1| | 3.33E-115 | PREDICTED: eukaryotic translation initiation factor isoform 4E-2-like [Elaeis guineensis] |
| Swissprot | tr|O81482|IF4E2_MAIZE | 3.00E-106 | Eukaryotic translation initiation factor isoform 4E-2 |
| trEMBL | tr|M0SY23|M0SY23_MUSAM | 4.00E-112 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr5P12940_001} |
| TAIR | AT5G35620 | 3.00E-85 | Eukaryotic initiation factor 4E protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000068 | 3069087 | 3080207 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX014393
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01652.17 | IF4E | 30 | 183 | 4.60E-54 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006413 | Biological Process | translational initiation |
| GO:0003723 | Molecular Function | RNA binding |
| GO:0003743 | Molecular Function | translation initiation factor activity |
| GO:0005737 | Cellular Component | cytoplasm |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 200.930 |
| SRR2545915 | Juvenile tuber | 345.490 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 298.470 |
| SRR5643514 | five period of Gastrodia elata | 281.900 | |
| SRR5643515 | five period of Gastrodia elata | 283.840 | |
| SRR5643524 | five period of Gastrodia elata | 266.940 | |
| SRR5643525 | five period of Gastrodia elata | 453.180 | |
| SRR5643528 | five period of Gastrodia elata | 408.340 | |
| SRR5643658 | five period of Gastrodia elata | 432.480 | |
| SRR5643659 | five period of Gastrodia elata | 400.470 | |
| SRR5643660 | five period of Gastrodia elata | 348.930 | |
| SRR5643661 | five period of Gastrodia elata | 393.090 | |
| SRR5643662 | five period of Gastrodia elata | 345.350 | |
| SRR5643663 | five period of Gastrodia elata | 406.850 | |
| SRR5643664 | five period of Gastrodia elata | 373.670 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 327.170 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 236.260 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 373.720 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 324.040 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 315.380 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 285.450 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 311.720 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 315.250 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 324.470 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 311.770 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 359.040 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 359.040 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 543.55 |
| Juven | Juvenile tuber | 363.72 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 362.12 | |
| Mother_Juven | Mother tuber of Juvenile | 289.27 |