Gene detail

Detail information of GWHGAAEX014394/evm.TU.scaffold_59.159

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|410670827\|ref\|YP_006923198.1\|	1.00E-53	GTP-binding protein [Methanolobus psychrophilus R15]
KOG	KOG1490	0	GTP-binding protein CRFG/NOG1 (ODN superfamily)
nr	gi\|743877907\|ref\|XP_010908039.1\|	0	PREDICTED: nucleolar GTP-binding protein 1-like [Elaeis guineensis]
Swissprot	tr\|Q9C6I8\|NOG1_ARATH	0	Nucleolar GTP-binding protein 1
trEMBL	tr\|U5G3L8\|U5G3L8_POPTR	0	Nucleolar GTP-binding protein 1 {ECO:0000256\|PIRNR:PIRNR038919}
TAIR	AT1G50920	0	Nucleolar GTP-binding protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000068	3082032	3090413	-

Transcript Sequence
>GWHTAAEX014394 TTTTCCTTCGTACCCTAAAACGCAAAGCCCTCTCCATCCAACAACACTTTTTAACATTTGGCCGCATGCTTGAAATCTTAACCTCATATCTTCAATTCGGCGCAAGCTAGAGCAGCCGATCCCCTCTTTTTCCCTTGAAGAACTCGTCGATTCCTTACTCTTCTTCTTCGGCACAGTTTCTGGCTACGACGAGGACTCCATAATATTTCTTCTCTACTTCGTAGTTCGTCAGCTCTTTGGCTTGGTCTCCGGATCATATGCCGTAGATTCACTGACAAGGTGACCTTGAGATCCTTATTGCATCGCTGGGAGACTTCCGCTTGTGAGATTATAAAAAAAGGGCTGCCTTGCTCTAAATAAATAACAGTCATGGTTCAGTACAACTTCAAAAAGATTACCATCGTTCCTACCGGGAAGGAATTCGTTGATATTATCCTTTCTCGTACTCAACGCCAAACACCGACGGTTGTTCACAAAGGATATGCTATTTCCCGCCTCCGTCAATTTTACATGAGGAAGGTGCGGTTCACACAGCAGAACTTTCACAAGAAACTGTCCACCATTATCGAAGAGTTTCCGAGGCTAGAAGACATTCATCCGTTCTATGGGGATCTTCTTCATGTCCTTTACAACAAGGACCACTACAAGCTCGCCCTCGGTCAGATCAACACAGCGAGGAATATCATTGGAAAGATCGCCAAGGACTACGTCAGGCTTCTCAAATATGGCGACTCTCTTTACCGATGCAAGTGCCTGAAGGTCGCCGCGCTTGGTCGGATGTGCACAGTGTTAAAACGAATTGGGCCGAGCTTAGCCTACTTGGAGCAGATCAGACAGCACATGGCCAGGCTCCCCTCCATCGACCCCAACACCCGTACCATCCTGATATGTGGATACCCTAATGTCGGCAAGAGCTCTTTCATAAACAAGATTACTAGGGCTGACGTCGACGTACAGCCCTATGCTTTCACCACCAAATCTCTTTTCGTCGGCCATACGGATTACAAGTACTTGAGGTATCAGGTGATCGACACTCCTGGGATTCTTGACCGGCCTTTCGAGGACCGCAATATTATTGAAATGTGCAGCATCACTGCCCTGGCACACCTTAGATCTGCTGTTCTGTTCTTTCTCGATATCTCCGGCTCATGCGGCTACAGCATTGCCCAGCAGGCGGCGCTGTTTCACAGCATCAAGTCGCTCTTTATGAACAAGCCGCTAATTGTTGTCTGCAATAAGATTGATTTGCAGCCACTGGAGGGGCTTTCGGATGAAGATAGGAAGCTGGTTATGGAGATGAAAGAGGAAGCTGTAAAGGCTGCCATGGCCCAAGGCGGGGAGCCAAATGATGAAGGGGTGCTGTTGACCATGAGCACTCTGACTGATGATGGTGTTATTGCTGTTAAGAATGCCGCCTGTGAGCGGCTGCTGAACCAGAGGGTGGAGATGAAGATGAAGTCTAAGAAGATCAACGACTGCTTGAACCGGTTCCACGTTGCGATTCCCAAACCCCGCGATAACAAGGAGCGTCCTCCTTGCATCCCTCAGGCAGTTCTGGATGCCCGCATGAAGCGGGGCACAGAGATGCAGAGGAAACTCGAGAAAGATCTAGAGAACGAGAATGGCGGCGCTGGTGTCTACTCTGCCAGTCTTAAGAAGCATTACATCTTGGCTGACGACGAGTGGAAGGAAGACATCATGCCAGAGATTTTGGATGGGCATAACGTATACGATTTTGTGGATCCTGACATCCTCCAAAGGTTGGAAGAGCTGGAGAGAGAGGAGGGACTTCGTATTGAAGCGCAGTCCGAAGATGCTGCATTTGAAATTGATGGGAAGGAGTTGACGCCCGAGGAGCGGGAGGCTCTTGCCGAGATTCGAAAGAAGAAGAGCCTGCTCATTCAAGAGCATAGAATGAAGAAGAGCACCGCCGAGAGTCGCCCTGTCGTTCCAAGAAAGTTCAACAAGGATAGGAAGTTCACGACGGAGAGAATGGGGAGGCAACTCTCGGCGTTGGGACTCGACCCGTCGACTGCCATTGACCGCGCGAGGAGCAGGTCTCTTTCCAGGAAGGGCCGGAAGAGGGAGCGATCGTCAGCCGAAACCATGGATATTGATGATGAACACATGAGCAAGAAGCTGCGGATGAGGTCGAGGTCGAGGTCACGGTCGAGACCGCCGGGTGAAGTTGTGCCTGGAGAAGGATTCAAGGACTCTGCACAAAAGCTGAAGGCAATCAAGCTTAAGAAGAAGTCTGAGAAGAACAGGAACAAGGCGGCTCGTCGAGGAGAGGCGGATAGAGTTATTCCTAATCTCAAACCCAAGCACTTGTTCTCTGGAAAGCGCTCAATCGGGAAGACGCAGAGGCGCTGAGAAAGGAGGACAGGTTCGTTTTTTTTTTTTTTTTTTTT

Network for GWHGAAEX014394

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF06858.13	NOG1	236	292	2.80E-25
PF08155.10	NOGCT	408	461	2.40E-28

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K06943	NOG1	Ribosome biogenesis in eukaryotes	map03008

Gene Ontology

GO term	Ontology	Name
GO:0005525	Molecular Function	GTP binding
GO:0005730	Cellular Component	nucleolus

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	24.440
SRP064423	SRR2545915	Juvenile tuber	21.230
SRP108465	SRR5643513	five period of Gastrodia elata	44.470
	SRR5643514	five period of Gastrodia elata	40.840
	SRR5643515	five period of Gastrodia elata	40.310
	SRR5643524	five period of Gastrodia elata	40.370
	SRR5643525	five period of Gastrodia elata	39.060
	SRR5643528	five period of Gastrodia elata	41.540
	SRR5643658	five period of Gastrodia elata	36.650
	SRR5643659	five period of Gastrodia elata	56.410
	SRR5643660	five period of Gastrodia elata	56.900
	SRR5643661	five period of Gastrodia elata	55.800
	SRR5643662	five period of Gastrodia elata	62.470
	SRR5643663	five period of Gastrodia elata	55.370
	SRR5643664	five period of Gastrodia elata	49.300
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	40.140
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	38.270
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	47.780
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	33.320
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	37.910
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	34.090
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	43.030
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	37.370
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	55.640
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	53.340
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	50.120
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	50.120
SRP279888	Gastro	Gastrodia elata tuber	52.53
	Juven	Juvenile tuber	37.61
	Mother_Gastro	Mother tuber of Gastrodia elata	37.62
	Mother_Juven	Mother tuber of Juvenile	27.25