Detail information of GWHGAAEX014396/evm.TU.scaffold_59.162
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|37522457|ref|NP_925834.1| | 2.00E-31 | hypothetical protein gll2888 [Gloeobacter violaceus PCC 7421] |
| KOG | KOG0289 | 0 | mRNA splicing factor |
| nr | gi|743779648|ref|XP_010920296.1| | 0 | PREDICTED: pre-mRNA-processing factor 19-like [Elaeis guineensis] |
| Swissprot | tr|Q9AV81|PRP19_ORYSJ | 0 | Pre-mRNA-processing factor 19 {ECO:0000305} |
| trEMBL | tr|M0RNT3|M0RNT3_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr11P02530_001} |
| TAIR | AT1G04510 | 0 | MOS4-associated complex 3A |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000068 | 3152741 | 3192757 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX014396
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF08606.10 | Prp19 | 109 | 175 | 4.80E-32 |
| PF00400.31 | WD40 | 298 | 335 | 2.70E-08 |
| PF00400.31 | WD40 | 431 | 466 | 0.0024 |
| PF00400.31 | WD40 | 525 | 555 | 0.0018 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | U-box |
| Ubiquitin Family | DWD |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K10599 | PRPF19, PRP19 | Spliceosome | map03040 |
| Ubiquitin mediated proteolysis | map04120 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0016567 | Biological Process | protein ubiquitination |
| GO:0005515 | Molecular Function | protein binding |
| GO:0004842 | Molecular Function | ubiquitin-protein transferase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 162.300 |
| SRR2545915 | Juvenile tuber | 145.950 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 47.210 |
| SRR5643514 | five period of Gastrodia elata | 49.340 | |
| SRR5643515 | five period of Gastrodia elata | 43.930 | |
| SRR5643524 | five period of Gastrodia elata | 48.470 | |
| SRR5643525 | five period of Gastrodia elata | 31.560 | |
| SRR5643528 | five period of Gastrodia elata | 31.440 | |
| SRR5643658 | five period of Gastrodia elata | 35.820 | |
| SRR5643659 | five period of Gastrodia elata | 53.000 | |
| SRR5643660 | five period of Gastrodia elata | 55.910 | |
| SRR5643661 | five period of Gastrodia elata | 53.420 | |
| SRR5643662 | five period of Gastrodia elata | 49.600 | |
| SRR5643663 | five period of Gastrodia elata | 51.440 | |
| SRR5643664 | five period of Gastrodia elata | 52.220 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 70.750 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 59.100 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 64.650 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 80.430 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 84.340 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 94.880 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 85.040 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 79.840 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 67.850 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 77.600 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 56.950 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 56.950 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 84.64 |
| Juven | Juvenile tuber | 80.88 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 31.44 | |
| Mother_Juven | Mother tuber of Juvenile | 53.71 |