Detail information of GWHGAAEX014401/evm.TU.scaffold_59.168
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 0 | FOG: PPR repeat |
| nr | gi|743779617|ref|XP_010920279.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At1g33350 [Elaeis guineensis] |
| Swissprot | tr|Q9C501|PPR70_ARATH | 0 | Pentatricopeptide repeat-containing protein At1g33350 |
| trEMBL | tr|A0A067KNV4|A0A067KNV4_JATCU | 0 | Uncharacterized protein {ECO:0000313|EMBL:KDP37792.1} |
| TAIR | AT1G33350 | 0 | Pentatricopeptide repeat (PPR) superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000068 | 3223184 | 3230094 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX014401
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module3 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 130 | 158 | 0.71 |
| PF12854.6 | PPR_1 | 229 | 258 | 4.30E-08 |
| PF13041.5 | PPR_2 | 261 | 308 | 4.60E-09 |
| PF01535.19 | PPR | 337 | 364 | 0.00026 |
| PF13041.5 | PPR_2 | 366 | 410 | 9.70E-10 |
| PF12854.6 | PPR_1 | 430 | 462 | 1.00E-05 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 1.150 |
| SRR2545915 | Juvenile tuber | 0.880 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 2.080 |
| SRR5643514 | five period of Gastrodia elata | 1.920 | |
| SRR5643515 | five period of Gastrodia elata | 1.920 | |
| SRR5643524 | five period of Gastrodia elata | 1.530 | |
| SRR5643525 | five period of Gastrodia elata | 0.500 | |
| SRR5643528 | five period of Gastrodia elata | 0.550 | |
| SRR5643658 | five period of Gastrodia elata | 0.230 | |
| SRR5643659 | five period of Gastrodia elata | 3.570 | |
| SRR5643660 | five period of Gastrodia elata | 3.440 | |
| SRR5643661 | five period of Gastrodia elata | 4.780 | |
| SRR5643662 | five period of Gastrodia elata | 4.330 | |
| SRR5643663 | five period of Gastrodia elata | 3.330 | |
| SRR5643664 | five period of Gastrodia elata | 2.830 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 1.540 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 3.560 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 2.510 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 0.940 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 0.990 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.770 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 2.020 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 1.280 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 2.490 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 1.690 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 3.120 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 3.120 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 2.37 |
| Juven | Juvenile tuber | 1.08 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.97 | |
| Mother_Juven | Mother tuber of Juvenile | 0.63 |