Detail information of GWHGAAEX014402/evm.TU.scaffold_59.169
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|219849311|ref|YP_002463744.1| | 6.00E-90 | ammonium transporter [Chloroflexus aggregans DSM 9485] |
| KOG | KOG0682 | 0 | Ammonia permease |
| nr | gi|672123559|ref|XP_008785143.1| | 0 | PREDICTED: ammonium transporter 1 member 2-like [Phoenix dactylifera] |
| Swissprot | tr|Q6K9G1|AMT12_ORYSJ | 0 | Ammonium transporter 1 member 2 |
| trEMBL | tr|A0A067ENG1|A0A067ENG1_CITSI | 0 | Uncharacterized protein {ECO:0000313|EMBL:KDO52481.1} |
| TAIR | AT4G13510 | 0 | ammonium transporter 1;1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000068 | 3231091 | 3232617 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX014402
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00909.20 | Ammonium_transp | 49 | 474 | 2.90E-131 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0072488 | Biological Process | ammonium transmembrane transport |
| GO:0015696 | Biological Process | ammonium transport |
| GO:0008519 | Molecular Function | ammonium transmembrane transporter activity |
| GO:0016020 | Cellular Component | membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 4.510 |
| SRR2545915 | Juvenile tuber | 5.480 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 71.920 |
| SRR5643514 | five period of Gastrodia elata | 52.200 | |
| SRR5643515 | five period of Gastrodia elata | 80.050 | |
| SRR5643524 | five period of Gastrodia elata | 65.240 | |
| SRR5643525 | five period of Gastrodia elata | 52.900 | |
| SRR5643528 | five period of Gastrodia elata | 84.070 | |
| SRR5643658 | five period of Gastrodia elata | 46.570 | |
| SRR5643659 | five period of Gastrodia elata | 62.810 | |
| SRR5643660 | five period of Gastrodia elata | 35.180 | |
| SRR5643661 | five period of Gastrodia elata | 64.690 | |
| SRR5643662 | five period of Gastrodia elata | 78.760 | |
| SRR5643663 | five period of Gastrodia elata | 48.000 | |
| SRR5643664 | five period of Gastrodia elata | 46.280 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 45.460 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 38.540 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 41.800 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 45.520 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 59.300 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 74.880 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 47.440 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 56.420 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 40.660 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 47.480 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 57.010 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 57.010 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 19.44 |
| Juven | Juvenile tuber | 48.05 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 194.41 | |
| Mother_Juven | Mother tuber of Juvenile | 70.94 |