Detail information of GWHGAAEX014406/evm.TU.scaffold_59.173
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|374287823|ref|YP_005034908.1| | 7.00E-56 | putative beta-amylase precursor [Bacteriovorax marinus SJ] |
| nr | gi|672190017|ref|XP_008775132.1| | 0 | PREDICTED: beta-amylase 1, chloroplastic [Phoenix dactylifera] |
| Swissprot | tr|Q9LIR6|BAM1_ARATH | 0 | Beta-amylase 1, chloroplastic (Precursor) |
| trEMBL | tr|M0SX91|M0SX91_MUSAM | 0 | Beta-amylase {ECO:0000256|RuleBase:RU000509} |
| TAIR | AT3G23920 | 0 | beta-amylase 1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000068 | 3292738 | 3295306 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX014406
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module1 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01373.16 | Glyco_hydro_14 | 106 | 526 | 6.20E-132 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH14 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K01177 | E3.2.1.2 | Metabolic pathways | map01100 |
| Biosynthesis of secondary metabolites | map01110 | ||
| Starch and sucrose metabolism | map00500 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0000272 | Biological Process | polysaccharide catabolic process |
| GO:0016161 | Molecular Function | beta-amylase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 31.010 |
| SRR2545915 | Juvenile tuber | 48.380 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 108.010 |
| SRR5643514 | five period of Gastrodia elata | 82.050 | |
| SRR5643515 | five period of Gastrodia elata | 279.100 | |
| SRR5643524 | five period of Gastrodia elata | 96.970 | |
| SRR5643525 | five period of Gastrodia elata | 753.790 | |
| SRR5643528 | five period of Gastrodia elata | 575.550 | |
| SRR5643658 | five period of Gastrodia elata | 845.290 | |
| SRR5643659 | five period of Gastrodia elata | 118.170 | |
| SRR5643660 | five period of Gastrodia elata | 62.950 | |
| SRR5643661 | five period of Gastrodia elata | 179.400 | |
| SRR5643662 | five period of Gastrodia elata | 195.850 | |
| SRR5643663 | five period of Gastrodia elata | 127.510 | |
| SRR5643664 | five period of Gastrodia elata | 500.140 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 125.590 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 56.970 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 128.850 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 81.840 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 98.140 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 114.300 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 211.190 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 126.980 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 117.570 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 241.350 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 134.090 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 134.090 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 48.82 |
| Juven | Juvenile tuber | 7.78 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 365.05 | |
| Mother_Juven | Mother tuber of Juvenile | 55.34 |