Detail information of GWHGAAEX014414/evm.TU.scaffold_59.182
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 4.00E-110 | FOG: PPR repeat |
| nr | gi|743852359|ref|XP_010940369.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At4g33170 [Elaeis guineensis] |
| Swissprot | tr|Q9SMZ2|PP347_ARATH | 1.00E-110 | Pentatricopeptide repeat-containing protein At4g33170 |
| trEMBL | tr|M5WCB1|M5WCB1_PRUPE | 0 | Uncharacterized protein {ECO:0000313|EMBL:EMJ11374.1} (Fragment) |
| trEMBL | tr|M5WCB1|M5WCB1_PRUPE | 1.00E-23 | Uncharacterized protein {ECO:0000313|EMBL:EMJ11374.1} (Fragment) |
| TAIR | AT4G33170 | 4.00E-110 | Tetratricopeptide repeat (TPR)-like superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000068 | 3402083 | 3403936 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX014414
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 25 | 54 | 0.0074 |
| PF13041.5 | PPR_2 | 123 | 170 | 1.20E-10 |
| PF01535.19 | PPR | 198 | 224 | 0.37 |
| PF01535.19 | PPR | 227 | 256 | 1.3 |
| PF13041.5 | PPR_2 | 326 | 373 | 9.30E-11 |
| PF01535.19 | PPR | 400 | 424 | 0.14 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 1.580 |
| SRR2545915 | Juvenile tuber | 1.170 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 2.830 |
| SRR5643514 | five period of Gastrodia elata | 1.920 | |
| SRR5643515 | five period of Gastrodia elata | 2.680 | |
| SRR5643524 | five period of Gastrodia elata | 1.140 | |
| SRR5643525 | five period of Gastrodia elata | 0.870 | |
| SRR5643528 | five period of Gastrodia elata | 0.870 | |
| SRR5643658 | five period of Gastrodia elata | 1.080 | |
| SRR5643659 | five period of Gastrodia elata | 4.220 | |
| SRR5643660 | five period of Gastrodia elata | 3.210 | |
| SRR5643661 | five period of Gastrodia elata | 3.820 | |
| SRR5643662 | five period of Gastrodia elata | 3.850 | |
| SRR5643663 | five period of Gastrodia elata | 3.920 | |
| SRR5643664 | five period of Gastrodia elata | 4.970 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 4.210 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 1.640 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 4.050 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 2.160 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 3.000 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 1.470 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 3.510 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 2.940 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 4.780 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 5.220 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 6.310 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 6.310 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 2.29 |
| Juven | Juvenile tuber | 1.10 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.44 | |
| Mother_Juven | Mother tuber of Juvenile | 0.20 |