Detail information of GWHGAAEX014417/evm.TU.scaffold_59.186


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG08002.00E-51FOG: Predicted E3 ubiquitin ligase
nrgi|695050196|ref|XP_009413072.1|1.47E-78PREDICTED: RING-H2 finger protein ATL80-like [Musa acuminata subsp. malaccensis]
Swissprottr|Q9LM69|ATL80_ARATH7.00E-52RING-H2 finger protein ATL80
trEMBLtr|M0TQ58|M0TQ58_MUSAM5.00E-79Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr8P13550_001}
TAIRAT1G208232.00E-51RING/U-box superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000006835021683503261-
Transcript Sequence

Network for GWHGAAEX014417

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module1

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13639.5zf-RING_2991423.50E-14
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms11.530
SRR2545915Juvenile tuber9.370
SRP108465SRR5643513five period of Gastrodia elata17.670
SRR5643514five period of Gastrodia elata20.810
SRR5643515five period of Gastrodia elata16.620
SRR5643524five period of Gastrodia elata18.990
SRR5643525five period of Gastrodia elata103.160
SRR5643528five period of Gastrodia elata41.330
SRR5643658five period of Gastrodia elata115.770
SRR5643659five period of Gastrodia elata16.060
SRR5643660five period of Gastrodia elata12.950
SRR5643661five period of Gastrodia elata14.620
SRR5643662five period of Gastrodia elata18.780
SRR5643663five period of Gastrodia elata17.460
SRR5643664five period of Gastrodia elata24.310
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_112.120
SRR6049655Rhizomagastrodiae_C368-T10_good_116.300
SRR6049656Rhizomagastrodiae_C368-T07_good_112.870
SRR6049657Rhizomagastrodiae_C368-T07_good_115.710
SRR6049658Rhizomagastrodiae_C368-T04_good_116.000
SRR6049659Rhizomagastrodiae_C368-T04_good_114.170
SRR6049660Rhizomagastrodiae_C368-T01_good_110.480
SRR6049661Rhizomagastrodiae_C368-T04_good_116.130
SRR6049662Rhizomagastrodiae_C368-T01_good_17.010
SRR6049663Rhizomagastrodiae_C368-T01_good_15.770
SRR6049664Rhizomagastrodiae_C368-T10_good_115.770
SRR6049665Rhizomagastrodiae_C368-T10_good_115.770
SRP279888GastroGastrodia elata tuber 26.76
JuvenJuvenile tuber21.13
Mother_GastroMother tuber of Gastrodia elata 5.79
Mother_JuvenMother tuber of Juvenile 12.75