Detail information of GWHGAAEX014418/evm.TU.scaffold_59.187
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 3.00E-62 | FOG: PPR repeat |
| nr | gi|672180197|ref|XP_008810281.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At2g17525, mitochondrial [Phoenix dactylifera] |
| Swissprot | tr|Q84VG6|PP160_ARATH | 5.00E-175 | Pentatricopeptide repeat-containing protein At2g17525, mitochondrial (Precursor) |
| trEMBL | tr|A0A061DKY9|A0A061DKY9_THECC | 0 | Pentatricopeptide repeat-containing protein, putative {ECO:0000313|EMBL:EOX90638.1} |
| TAIR | AT3G53700 | 3.00E-62 | Pentatricopeptide repeat (PPR) superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000068 | 3526170 | 3528183 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX014418
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 115 | 138 | 0.43 |
| PF01535.19 | PPR | 182 | 209 | 0.029 |
| PF12854.6 | PPR_1 | 210 | 241 | 1.30E-09 |
| PF12854.6 | PPR_1 | 243 | 271 | 5.40E-07 |
| PF01535.19 | PPR | 284 | 311 | 0.025 |
| PF13041.5 | PPR_2 | 315 | 361 | 4.10E-12 |
| PF12854.6 | PPR_1 | 381 | 413 | 1.60E-05 |
| PF01535.19 | PPR | 426 | 446 | 0.02 |
| PF12854.6 | PPR_1 | 487 | 518 | 2.00E-08 |
| PF13041.5 | PPR_2 | 528 | 573 | 1.80E-10 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 6.840 |
| SRR2545915 | Juvenile tuber | 5.130 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 6.290 |
| SRR5643514 | five period of Gastrodia elata | 4.110 | |
| SRR5643515 | five period of Gastrodia elata | 6.600 | |
| SRR5643524 | five period of Gastrodia elata | 4.540 | |
| SRR5643525 | five period of Gastrodia elata | 6.670 | |
| SRR5643528 | five period of Gastrodia elata | 4.410 | |
| SRR5643658 | five period of Gastrodia elata | 6.110 | |
| SRR5643659 | five period of Gastrodia elata | 5.600 | |
| SRR5643660 | five period of Gastrodia elata | 5.260 | |
| SRR5643661 | five period of Gastrodia elata | 5.920 | |
| SRR5643662 | five period of Gastrodia elata | 7.220 | |
| SRR5643663 | five period of Gastrodia elata | 6.210 | |
| SRR5643664 | five period of Gastrodia elata | 7.590 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 6.470 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 5.430 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 4.470 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 5.820 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 8.720 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 7.960 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 6.990 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 6.280 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 5.040 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 7.280 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 4.870 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 4.870 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 6.23 |
| Juven | Juvenile tuber | 6.93 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 4.14 | |
| Mother_Juven | Mother tuber of Juvenile | 4.63 |