Gene detail

Detail information of GWHGAAEX014421/evm.TU.scaffold_59.194

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG4322	3.00E-82	Anaphase-promoting complex (APC), subunit 5
nr	gi\|743761457\|ref\|XP_010942363.1\|	0	PREDICTED: LOW QUALITY PROTEIN: anaphase-promoting complex subunit 5 [Elaeis guineensis]
Swissprot	tr\|Q8H1U4\|APC5_ARATH	0	Anaphase-promoting complex subunit 5
trEMBL	tr\|M0U4H9\|M0U4H9_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr9P29220_001}
TAIR	AT1G06590	3.00E-82	Unannotated protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000068	3660085	3664072	-

Transcript Sequence
>GWHTAAEX014421 CATCGCCTTCAAAAATTTCGAAAGATTCCCGCAGAGTTTCTTGCCCAGTTTCATTCTGTCTAACCCTAACATCTCTCTCTTTTATTTTATAACGTTGCAACATGAGCAGGATTGCTGTCACTGGGGCTTTGAAGGACGGTGGTTTTGCTGTGTTAGATCTCACACCTCACAAAATAGCCGTTTGCCACTTGATTCAGTTCTTTGCCCCGCCGTTGCAGCGGACTGTTCCCTTCCCGATTGACTCCGTTTCGCAGCACAATCGCCTCGGCCTCTTCATTTTCTCCCTCACCAGGGCTTGCAATGATTTTGTGGAGCCTTCTTTGTTGGATTTGATAAACCAATTAAAGGTCATTGGGGATTCAGCCAATGGCTGGCTATGTGAGCATTTAACGAGCAGCCTGTCTGAGCTATCTTCGCCTGATGATTTGCTTAACTTTTTTGAGAAACTAAAAGGTATTGTTGCTGTCGTTGATGATGCACATTTGGAAGATGACCAAATTTTTTTGGATCCTAACAGTCATTTGGGAGTGTTTTTGCGGTGTTGCATACTTTCTTTCAATCTATTGACATTTGAAGGTGTTTGTCATCTGCTGACCAATATATTTACATATTGCAACTCATATGATTCTTGCTATGAGCTGCAAGAATCAGAGTTTCAGGAGTTATTGGAGGATGATCAACTATATTATGAAATAGATGCCTTTCAAAAGTTCAGGCATGCTATTCAGGCTACTTCTGCAGGGGGGAGCTCAAATTCACATAGTGGCTCATCTCGATTGATGTCTCACCCAACAAATGATAAAGAAATTCTGGATCCTTCTTGGTTTAAAAGCAGGGAGTGCCATGATCAGAGCAGGGAATTGGATTCTTCAGTGATCACTAATTTCAGAAACTATGATCACCAAGGGTTCTTACGTACCAGGTGGCAAGTAGAGGGATATCTTAACATGCAAGCTGATTTTCTTGAAAGGGATGCTGGCTCCTTTCCTTTGAATTCATTCAGCACAGTTCTAAAGCACTTGCATAAGCTAGCCCCGGATCTCCACCGTGTTGAGTACTTAGAATACTTGAACAGTCTTTTTCACCAGGATTATCTTTCTTCTTTAGAGAATCTACACAGTTACTTTGATTACAGTGCAGGGAATGAAGGAATTTTTAATCGTTCCTCTACTTCAACGTCAGATATTTTTGTTGGAAGGTATGAGACAGCATTACTGTGCTTAGGCACCATGCACTGTAATTTTGGGCATCCAAAGAAAGCATTGGAGGCTTTAACTGAAGCTGTTAGATTCGCTCAATTGAACAATGATGATGCCTGTCTTGCTTATACTCTGACTGCCATTTGCAATTTATTGTCAGATGTGGGCATTTTAAGTACATCCGGAATTTTGGGTTCCCAAGATTCACTTGAATCCAGCATGACTCTGGGTGCACCCTTGACCACCCAGCAACATTTACTTGTCCTTCTTAATAGGTCTATGAAAAGGGCTGATACTCTGAAGCTGATGAGTCTTATGGCCTTTAACCGTCTTGTTTTGTCAAAGTTTGATCTTAAGCATGTAAGAAGATCATTGATATGTTTTGGTCCTAAGAGTTCCACAATGCTTCGAACCTGCCCAGTGATTGTATGCAAAGAATTACGATTGTGTTTGCAAGATTTGAGTGAGTTTGGAAATGATGGATTATTACGGCCAAATGATGATGGAAGCTTCAGCACTTCATGGATTAAGAATCTTGTAGCTGCTAGTAGTATTCCGTTTGAGAATATAAGAAAATTGAGTAGTTCTTCAGTGAATGATTTTGACTTGTTCCACTTTGATGCACAACCTAATCCAATTGCAAGGTCCGTTCTACAATTGGCTGGTTCATCATATTTGTTAAGAGCTACTTCATGGGAGCTATATGGAAGTGCTCCACTTGTGCGTATGAATTCATTGGTTTATGCTACTTGCTTTGCTAATGGTGCAAGCCTGTCTGATTTATCTTTAGCCTATGTAAAGCTGATCCAACATTTGGCAGTATTCAAAGGCTATGAGGAAGCTTTTGTGGCTTTGAAGCTCGCTGAAAAGAAATTCTCACCTGTGTCAAAATCACACATTCAACTTCTTAAGTTGCAGTTACTCCATGAACGAGCTTTACATAGAGGACAGTTGAAAGTTGCTCAACGAATGTGTGATGAAATTGGGGTGCTGGCCTCATCAACAAGTGGTGTGGACATGAATATTAAAATAGATGGAAATTTGCGGCTTGCCCGTACTTTACTTGCAGCTAACCAATTTACTAAGGCAGCTGATGTTGCACATTCCCTGTTTTGCATGTGCTATAAATTTAATATGCAAGTTGAGAATGCCACTGTTCTTCTATTACTTGCTGAAATACACAAGAAATCAGACAATATGGTTCTAGCACTCCAATATGCATTAGCTAGTCTGTCATTTTGTCATGCCTTTAACTTGGACCTACTTGAAGCATCTGCTACATTGACACTAGTGGAGTTGTGGCTATCTCTGGGGTTGAACCAAGCAAAGAGAGGATTGAGCCTTTTACGTAAAATATTTCCAATGATTCTTGGTCATGGGGGATTACAGCTGCGTGCAAGGGCAAATATAGCGCTGGCCAAATGCTATTTATCAGATTCAACCTTCTTGCTTTCCGAAAATCCTGGTATTGTGCTGGATCCTTTGAATCAGGCTGCCCGGGAGCTACAGATTCTGGATTATCATGAAATGGCATCAGAGGCGTTTTATTTGATTGCTATGATCTACAACCATCTTGAACAAGTGGCGGCAAGGGAGGATGCAGCAAGCTCATTCAGAAAACATATCAATGCTCTCAAGAACCCGCAAGTCGAGGAGGATACATATTTTACTATATTTAACTAACAGTTCTTCTAATCTGTTCACTTGTGGGAGGGTTTAACAGCTGTCTTACTGCAGTGCAGATTTGAAGGAGAAGTAATAAATTATTTTAATCCTGACGAACGTGGAATTGGATACTGCTGCAGAAATATTTTGCTTCAAATTGTTTGAAAAGGATGCAGTTTCATTATAGGCTTTTCACACCTTCAATTAAAGTATGAAGCCTTCAGTTACTTTCCATTCCAGGTTTTCTTCCTCTCTCTCTCTCATGCATCACAAGCTCAAAACAAAAGTGAATAAATGTTTGGCATTTGAAAGTCCATGTTTTGTGCAAGTTTAACAATCTTAAAGTGAAGTAGTCATTATATGCACATAAACATATATATATATATATATATTT

Network for GWHGAAEX014421

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12862.6	ANAPC5	319	419	1.70E-26

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03352	APC5	Ubiquitin mediated proteolysis	map04120
		Cell cycle	map04110
		Cell cycle - yeast	map04111
		Meiosis - yeast	map04113
		Oocyte meiosis	map04114
		IL-17 signaling pathway	map04657
		Progesterone-mediated oocyte maturation	map04914

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	6.590
SRP064423	SRR2545915	Juvenile tuber	6.210
SRP108465	SRR5643513	five period of Gastrodia elata	4.130
	SRR5643514	five period of Gastrodia elata	4.740
	SRR5643515	five period of Gastrodia elata	3.890
	SRR5643524	five period of Gastrodia elata	3.150
	SRR5643525	five period of Gastrodia elata	4.200
	SRR5643528	five period of Gastrodia elata	2.810
	SRR5643658	five period of Gastrodia elata	5.050
	SRR5643659	five period of Gastrodia elata	5.470
	SRR5643660	five period of Gastrodia elata	4.230
	SRR5643661	five period of Gastrodia elata	4.590
	SRR5643662	five period of Gastrodia elata	3.440
	SRR5643663	five period of Gastrodia elata	3.890
	SRR5643664	five period of Gastrodia elata	3.680
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	4.440
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	2.870
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	4.110
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	4.000
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	4.330
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	3.420
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	4.520
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	4.980
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	4.230
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	3.570
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	3.770
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	3.770
SRP279888	Gastro	Gastrodia elata tuber	5.53
	Juven	Juvenile tuber	6.63
	Mother_Gastro	Mother tuber of Gastrodia elata	2.36
	Mother_Juven	Mother tuber of Juvenile	3.51