Gene detail

Detail information of GWHGAAEX014428/evm.TU.scaffold_59.205

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|383454884\|ref\|YP_005368873.1\|	1.00E-82	putative oxygen-dependent FAD-linked oxidoreductase [Corallococcus coralloides DSM 2259]
KOG	KOG1231	6.00E-146	Proteins containing the FAD binding domain
nr	gi\|695026065\|ref\|XP_009400307.1\|	0	PREDICTED: cytokinin dehydrogenase 3-like [Musa acuminata subsp. malaccensis]
Swissprot	tr\|Q8LNV6\|CKX3_ORYSJ	0	Cytokinin dehydrogenase 3 (Precursor)
trEMBL	tr\|M0RWA6\|M0RWA6_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr1P01980_001}
TAIR	AT2G41510	6.00E-146	cytokinin oxidase/dehydrogenase 1

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000068	3822925	3826979	+

Transcript Sequence
>GWHTAAEX014428 TATCTGAAAAAAAGCATCCTCATTCTGAGTTCCTAGCATTATGCTCATTTTATCTACTTTTGGGTTTAATTTTGTGCATATTTTTCTTATGAACCGCGTGGATGAACGGCGAAGCCGTGGCCTGTTGGAGAACGAGGCGATGGATTCGTGAAGGCGAAGTCATGAACTTACAGCGAGTGTTTTTTGGATCTATGTTTCTTTGAGAAGAGAGTACAATGTATGTACAGTGCTTCAATCCGCTTGCTTTTCGATACGGAAAAGGTTTCTTTCTAGTGTTTATATTTATTCAGTTCTCTATTTATCAAATAAAAGGAACACTCACTGAAAGCACAAAAAAAAAAAATTTTCTTGGCTCTGATCTCTCTTCTTTGAACTACATCTGATGCACTGGTTTTAGGTCTTATTTTCGGTTAACTGTTTGTGTGCTTCATTATCATTTTAAGAGAGAAGAATGGACTATGATGAATAATTTGAAGCTGCAATCTCCTATTTGAAGACCTTAACAAATTCTTTGAAGAGAAGCCCTAGGGGGGGTGTCATAAATTCCGCCCAACTTCCAACTTCCAACTTCCCATAGAGTATCTATTCTTTGTTTTGTTTTCATTTTCATGTTAGATCATTCATTTTGCTTTTTCTCTGGAGTTGGCAGCAGAACTTAAACCGTGAGCATTATAACAACTACAAAAAAAACTTTGACGACTATAGCAAAACCAGGGCTAAAACAAAGTTCTATTCTTTTGCTCTATATATTCTATAGCTGAGTGCTGCAGCTCCGTGAGTTCCCCTTTCTGTCTCTCTCAGCATTCCTTTTTTTCACTGAACTCGCTCGCTATAAGAAGGGAAAGGGGTGCTAGATTTTCCCACCCCTTTCCCTTGATAGACGCAATCTTCTCTTTTGTTTGTTTTCTGAGAGGATTGCGGAGCATTTTCCTTTATTTAAAAGCTCTTCTCTCCGAACCTTCTTCTCCACAACCTTGCCCCTCCTCTCCAATGGAGTCCTGCATCCACATCACCAAGTTTAATATTCTGATCGTTTTTCTTACCGTCTGTTCCATCTCAAAGTTCATACAGAGCCCAATGGAAACGGGCTCGTTCAGCTATCTAAAAGCCACAAGCTTGGCTTTTGGCAGCCGTTTAAACTTCCACGAAATCACAGCCGCTGCTTCGGCAGACTTTGGGCGATTGATTTTCAACATCCCCGCTGCGGTCTTCAGACCAAAGTCCTCAGAAGACATTTCAGCCCTCCTGAGTTTCCTCTCATCTTCTTCTGCAAAGCCTACAGTCGCAGCCAGAGGAGCTGGGCATTCCATTCACGGCCAAGCACAAACACCTGGTGGCATTGTCATACAGATGGACTCTCTTCCTTCCTCAATCGAAATTCACAAAGTTGTGGAAGGAGAGGAGGGATTCTCTTATGCCGATGTGAGCGGCGGGGCACTGTGGATTGAGCTCTTGGAGAAAAGCTTGGATCTTGGGCTGTCTCCCAGATCATGGACTGACTATCTCTATCTTAGCATTGGAGGGACTCTCTCTAATGCCGGAATCAGCGGACAGACCTTCAAGTATGGCCCTCAGATCAGCAATGTCCTGCAGCTTGAGGTGGTGACTGGAAAGGGAGATATTGTTACCTGTTCATCGACTCAAAGTTCAGAGCTTTTCCACGCTGTTCTTGGTGGGCTGGGCCAGTTTGGAATCATAACAAGAGCAAGGATTCTGCTCCAAGAAGCTCCTCATAAGGTGAGATGGGTGAGGGCCTTCTACGATGATTTCCAAGCATTCAGCAAGGATCAAGAGCTTCTGATCTCAATGCCAGAGAAGGTGGATTTTGTTGAAGGCTTCATAGTTCTTAACGAGAACTCCCTTCTCAGCTCCTCCATGACATTCCCATCTCAGATGGAATTCATTTCTGAGCTCCAAAAGGACACTTCCAAGGTTTTTTACTGCGTAGAGTTTGGTGTTTATGTGCACAAAACTCGGGAAAAAAGACTCAGCATAGAACAAGTAGTGAAGGAGATAAAAGCGAAGCTGGGGTTCCTCCCTTCCTTCATGTATAGCGCTGAAGTCTCCTATTATGATTTTCTGAATAGAGTGAGGATGGAGGAGATGAGCCTTAGGGAGAAAGGACTGTGGGAAGTGCCCCACCCGTGGCTTAATATGTTTGTGCCAAAGTCTGGTATTAATGAATTTAAGAACTTGCTTCTTGAGAGCATCTCAAAGCAAGATTTTGAAGGTCCAATCCTGCTCTATCCACTCCTTAAAGACAAGTGGGACATGAACACGTCGGCGGTGCTGCCGGAGCAGGCGGAGGAGAGGGTGATCTACGTGGTGGGTTTGCTGCAGTCTGCAAATCCCAGAAAGTGCGACTCGTCGTGCGTCGGCGATGCGGTCGATCGACGAAGACGTGTAGCGGACATCGCCGCCGGCGGAAGCATAGGCGCTAAGCAGTACCTCGGCCGGCTGCCATCGCCGGAGGGATGGCGGAAGCACTTCGGCGCTCAGTGGGACCTCTTTGCTGGCCGCAAGAAGACGTTCGATCCGCTAGGCCTGCTGGCTCCAGGCCAAGGAATTTTTATCAGAGCACCGGCTTATTTGCACACGCACTGTGAAAAGCGTAATCAGGGTTAAGTCCCATGTTTATCTTTATTTATGTTTCTCGCAGTGACAGTGATGACATTTTGTTATCTATTCTTTGAGAAACTAAACAGCCTCCAACAAAGTCGACAGCAGACTTCTCTCATCAATCATCCAACACTAACTAAGCCTGCAATACTAACTCTAACCACATTAGAGTATTAATAACCCTCAAAACAGTTGCCCTAAGAGTCATTGGATGATTGCCACGTGTGACACTTTCAGAATAGATGATATTTCTGATGACTAAAAGAAAATAACACCTCAGTACCAAGGCAAGCACGAAGGATGACAAAAAGAAACAAGTTTATTGACCTAATCATTCAAGTTGAGAAATATTATAAA

Network for GWHGAAEX014428

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01565.22	FAD_binding_4	70	215	9.40E-21
PF09265.9	Cytokin-bind	247	527	1.40E-100

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00279	CKX	Zeatin biosynthesis	map00908

Gene Ontology

GO term	Ontology	Name
GO:0055114	Biological Process	oxidation-reduction process
GO:0009690	Biological Process	cytokinin metabolic process
GO:0071949	Molecular Function	FAD binding
GO:0019139	Molecular Function	cytokinin dehydrogenase activity
GO:0016491	Molecular Function	oxidoreductase activity
GO:0003824	Molecular Function	catalytic activity
GO:0050660	Molecular Function	flavin adenine dinucleotide binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	0.800
SRP064423	SRR2545915	Juvenile tuber	0.140
SRP108465	SRR5643513	five period of Gastrodia elata	0.510
	SRR5643514	five period of Gastrodia elata	0.660
	SRR5643515	five period of Gastrodia elata	0.400
	SRR5643524	five period of Gastrodia elata	0.470
	SRR5643525	five period of Gastrodia elata	0.600
	SRR5643528	five period of Gastrodia elata	0.410
	SRR5643658	five period of Gastrodia elata	0.460
	SRR5643659	five period of Gastrodia elata	0.920
	SRR5643660	five period of Gastrodia elata	0.930
	SRR5643661	five period of Gastrodia elata	1.040
	SRR5643662	five period of Gastrodia elata	0.380
	SRR5643663	five period of Gastrodia elata	0.470
	SRR5643664	five period of Gastrodia elata	0.110
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	0.490
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	1.030
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	0.490
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	0.890
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	0.840
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	1.480
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	2.290
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	1.210
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	1.300
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	1.580
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	0.360
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	0.360
SRP279888	Gastro	Gastrodia elata tuber	0.35
	Juven	Juvenile tuber	1.04
	Mother_Gastro	Mother tuber of Gastrodia elata	0.58
	Mother_Juven	Mother tuber of Juvenile	0.34