Gene detail

Detail information of GWHGAAEX014432/evm.TU.scaffold_59.209

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG2491	Nuclear matrix protein
nr	gi\|695076712\|ref\|XP_009385659.1\|	PREDICTED: THO complex subunit 1 isoform X1 [Musa acuminata subsp. malaccensis]
Swissprot	tr\|Q93VM9\|THOC1_ARATH	THO complex subunit 1
trEMBL	tr\|M0U5Q3\|M0U5Q3_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_AchrUn_randomP02410_001}
TAIR	AT5G09860	nuclear matrix protein-related

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000068	3848384	3926533	-

Transcript Sequence
>GWHTAAEX014432 GCTGCTTATAAAATTTTCATTCGCTCGCCCTACCCTATTACCATTCAATCGAACGGCGCATTGATCGACTGATCGACCTTCCCCTCTGAAGCCGCCGCAGGAGCGACGTGTGGCTCGCGCCGCAAGCGCGCCAATGGGAGGCCTCATCAGATCGCCGCTGGTCTAACCCGTTAAGCCCATAACATTTCGCATCTTAAAAGATCGGCGTATCTTCGGAGAGAGTTTATTTGGGAGATGAATGGAGGCGATAGAACAAAACCGATGGAGATTCTACCTTACATTCACATCAAGCCCAGCTCAACCCCTTCGGTCCCCATCTCCTCGGAAGCTTTGATGAATGTCTCTTTGCAAAGACCTCTGGAAGTATTTAGAAATGCTATCATGCGACCAGGTTTGCCTGAAAATTTTTCCCTTCAGGTTTTACAAGAAGCTATAAAGCCTCAGAAGCAAACCGTGCTGATCCTGGACGAGAATCAGTCACTTGAAAATGCTCTTCGAACATTGCTTCAGGATCTAGTGTCAGAAGCTGTTCAGTCGGGTGAACGGACAATGCAATATGGGCAACCAATTGACCATGAAGAAATTAACTGTGCTTACATACCACGTCTTTTAGACATAGTGCTCTTTCTTTGTGAAAGAGGGCATATTGAGGGAGGTATGATATTTCAACTGCTTGAAGATTTGACAGAAATGTCAACCATGAAGGATTGCAAACAAGTGTTTGGCTATATAGAAAGCAAGCAAGACACATTAGGGAAGCAAGAGTTATTTGGGAGGGGCAAGCTTGTGATGCTCAGAACTTGCAATCAACTTCTTCGAAGACTCTCAAAGGCAAATGATGTGGTGTTTTGCGGGCGTATACTTATGTTTCTTGCCCATTTTTTCCCTTTGTCTGAACGATCAGCTGTTAATTTTAAAGGGGTCTTCAACATATCAAATGAGACTAAGTACGAGAAAGATGCTTCTGATGGAGTCTCTATTGATTTCAACTTTTACAAGACCTTTTGGAGTTTACAGGACCATTTCAGAAATCCAGCTGCAACTACTCTTCTGGTTGCGAAATGGCAGAAGTTCTCATCAAATCTAATTATTGTGCTTGATGCGTTTGAAGCCCAACCTTTGAGTGATGATGGTGAAAGTGTGAACAATTTTGAACAAGAGGAAACTTCTTTTAACATCAAGTATTTGACTAGTAGTAAGCTTATGGGGTTAGAGTTGAAAGATCCAAGTTTTCGACGCCATGTTCTTGTTCAGTGCCTCATATTGTTTGACTATCTCAAGGCACCAACTAAGAGTGAGAAAGATTGGCCTACTGATAGCATGAAAGAAGAAGTCAGATCCTGTGAACAACGTGTAAAAAAAATTTTAGAAAGTATTCCACCAAAAGGAAAGGTGTTTCTTGAAAGTATTGAGCACATACTGGAAAGAGAAAAGAATTGGTTGTGGTGGAAATGGGATGGCTGTCCACCGTTTGAGAAGCAACCTTCAGAGAAGAAAACTGGGCATGATGGAACAAAGAAACGCAAGCCAAGGTGGAGATTGGGGAACAAAGAGCTTTCACAGCTATGGAAATGGGCAGAACAAAATCCAAATGCTTTGAGTGATCCTCAGCGTGTTCGTATGCCTTCGGTGGCTGAGTACTGGAAACCTCTTGCTGAAGATATGGACCCGGCTGCCGGAATTGAAGAGGAATATAGGCACAAGAATAATCGCGTTTATTGTTGGAAAGGCCTTCGGTTCTCTTCCAGACAGGACTTGGAGGGCTTCTCTAAGTTTGCGGAGCATGGCGTCGAGGGTGTCGTCCCTCCGGAATTGCTGCCCCCCGAAGTTCGCTCCAAGTTTCATGCGAAGTATGGCGATAAAAATAAGCGAAGCAAAAGAGAAGAAGATTCGAAAAATGCGGCGGCCCAGGCTGAAGAAGGGCAGCTATTTCAAGCTGCCATTGCTGGGGTTGATGTTGAGGGAGGCGGAAGTGGGGCTGATTTGGATGATGTGGCGGCACCTATGGAGCCTGATGCCACTGGTGGGGCCACCGTTCCTACTCCAGAGGAAGGCGAGAAACAGAGCCCAGAGACAGACACAAGTCAGGAGGATGCCGGGCAGTCTGAGACCGAGGCTGAAGTCGATGTAAAAGGGGACTCGAGTAAAGAACTAGAAGTTGACGCTGATGGGTAATAAGGCGGGCTTTCCTACTTATACAGATATGGGTGCAAATCCTTCTGTCAAGGTTTGAGCTTTCTTCCTTAATGCAACTTTTTGATTAATCTTGTCAGTTGCTTATCTTTAGTTATGAAAGGCTAATTAGTTGCTTTTAAATGTCTTGAATCTGTGATCAAATATGAGTATATTGATGTGATAAGTTCATCTTTCCCAGATATTTTTTGTTTAAATTTGCTGCTCATTTTAGTGATTCAGATTGGGCATCGCTTACAAGCTATTTGTATACAAAAATCTGTTACACACTATTGCATGTTTATAGGATGCTCACTTATTTATGGAGTTTACACACTATTGCATGTTTATA

Network for GWHGAAEX014432

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF11957.7	efThoc1	124	524	2.30E-96

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12878	THOC1	Spliceosome	map03040
K12878	THOC1	RNA transport	map03013

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	59.080
SRP064423	SRR2545915	Juvenile tuber	77.950
SRP108465	SRR5643513	five period of Gastrodia elata	66.290
	SRR5643514	five period of Gastrodia elata	58.600
	SRR5643515	five period of Gastrodia elata	59.350
	SRR5643524	five period of Gastrodia elata	56.430
	SRR5643525	five period of Gastrodia elata	31.040
	SRR5643528	five period of Gastrodia elata	31.950
	SRR5643658	five period of Gastrodia elata	29.610
	SRR5643659	five period of Gastrodia elata	81.240
	SRR5643660	five period of Gastrodia elata	94.090
	SRR5643661	five period of Gastrodia elata	76.260
	SRR5643662	five period of Gastrodia elata	80.660
	SRR5643663	five period of Gastrodia elata	83.920
	SRR5643664	five period of Gastrodia elata	85.860
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	64.540
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	65.750
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	65.280
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	71.540
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	56.450
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	66.060
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	66.680
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	57.490
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	56.920
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	54.880
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	65.710
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	65.710
SRP279888	Gastro	Gastrodia elata tuber	64.18
	Juven	Juvenile tuber	98.70
	Mother_Gastro	Mother tuber of Gastrodia elata	48.02
	Mother_Juven	Mother tuber of Juvenile	65.44