Detail information of GWHGAAEX014447/evm.TU.scaffold_59.227


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG32027.00E-92SNARE protein TLG1/Syntaxin 6
nrgi|672128316|ref|XP_008787642.1|8.73E-123PREDICTED: syntaxin-52-like [Phoenix dactylifera]
Swissprottr|Q94KK7|SYP52_ARATH1.00E-98Syntaxin-52
trEMBLtr|B4FLD1|B4FLD1_MAIZE5.00E-117Uncharacterized protein {ECO:0000313|EMBL:ACF82924.1, ECO:0000313|EnsemblPlants:GRMZM2G115775_P04}
TAIRAT1G795907.00E-92syntaxin of plants 52

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000006842225094249030-
Transcript Sequence

Network for GWHGAAEX014447

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF05739.18SNARE1722221.50E-09
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K08503SYP5 SNARE interactions in vesicular transport map04130

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms48.720
SRR2545915Juvenile tuber54.210
SRP108465SRR5643513five period of Gastrodia elata53.420
SRR5643514five period of Gastrodia elata52.130
SRR5643515five period of Gastrodia elata54.340
SRR5643524five period of Gastrodia elata56.270
SRR5643525five period of Gastrodia elata75.970
SRR5643528five period of Gastrodia elata77.800
SRR5643658five period of Gastrodia elata81.110
SRR5643659five period of Gastrodia elata44.680
SRR5643660five period of Gastrodia elata44.260
SRR5643661five period of Gastrodia elata46.080
SRR5643662five period of Gastrodia elata49.120
SRR5643663five period of Gastrodia elata45.970
SRR5643664five period of Gastrodia elata42.880
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_137.260
SRR6049655Rhizomagastrodiae_C368-T10_good_138.480
SRR6049656Rhizomagastrodiae_C368-T07_good_139.560
SRR6049657Rhizomagastrodiae_C368-T07_good_136.990
SRR6049658Rhizomagastrodiae_C368-T04_good_136.040
SRR6049659Rhizomagastrodiae_C368-T04_good_139.940
SRR6049660Rhizomagastrodiae_C368-T01_good_135.600
SRR6049661Rhizomagastrodiae_C368-T04_good_135.920
SRR6049662Rhizomagastrodiae_C368-T01_good_133.900
SRR6049663Rhizomagastrodiae_C368-T01_good_135.140
SRR6049664Rhizomagastrodiae_C368-T10_good_149.450
SRR6049665Rhizomagastrodiae_C368-T10_good_149.450
SRP279888GastroGastrodia elata tuber 43.68
JuvenJuvenile tuber50.78
Mother_GastroMother tuber of Gastrodia elata 63.10
Mother_JuvenMother tuber of Juvenile 58.18