Detail information of GWHGAAEX014453/evm.TU.scaffold_59.233
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG1735 | 9.00E-77 | Actin depolymerizing factor |
| nr | gi|672140763|ref|XP_008794195.1| | 9.66E-83 | PREDICTED: actin-depolymerizing factor-like [Phoenix dactylifera] |
| Swissprot | tr|P30175|ADF_LILLO | 7.00E-82 | Actin-depolymerizing factor |
| trEMBL | tr|D7UC71|D7UC71_VITVI | 3.00E-80 | Putative uncharacterized protein {ECO:0000313|EMBL:CBI40336.3} |
| TAIR | AT1G01750 | 9.00E-77 | actin depolymerizing factor 11 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000068 | 4309260 | 4313528 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX014453
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00241.19 | Cofilin_ADF | 78 | 199 | 1.00E-37 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K05765 | CFL | Regulation of actin cytoskeleton | map04810 |
| Fc gamma R-mediated phagocytosis | map04666 | ||
| Axon guidance | map04360 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0030042 | Biological Process | actin filament depolymerization |
| GO:0003779 | Molecular Function | actin binding |
| GO:0015629 | Cellular Component | actin cytoskeleton |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.600 |
| SRR2545915 | Juvenile tuber | 0.600 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 8.520 |
| SRR5643514 | five period of Gastrodia elata | 36.650 | |
| SRR5643515 | five period of Gastrodia elata | 22.380 | |
| SRR5643524 | five period of Gastrodia elata | 24.370 | |
| SRR5643525 | five period of Gastrodia elata | 5.020 | |
| SRR5643528 | five period of Gastrodia elata | 14.570 | |
| SRR5643658 | five period of Gastrodia elata | 4.210 | |
| SRR5643659 | five period of Gastrodia elata | 0.710 | |
| SRR5643660 | five period of Gastrodia elata | 0.660 | |
| SRR5643661 | five period of Gastrodia elata | 0.230 | |
| SRR5643662 | five period of Gastrodia elata | 1.000 | |
| SRR5643663 | five period of Gastrodia elata | 0.380 | |
| SRR5643664 | five period of Gastrodia elata | 0.670 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 29.410 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 43.280 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 26.710 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 15.790 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 30.850 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 26.920 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 10.560 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 23.280 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 42.640 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 38.290 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 71.370 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 71.370 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 2.00 |
| Juven | Juvenile tuber | 2.92 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 107.96 | |
| Mother_Juven | Mother tuber of Juvenile | 24.88 |