Detail information of GWHGAAEX014454/evm.TU.scaffold_59.234


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|339503083|ref|YP_004690503.1|7.00E-104serine racemase [Roseobacter litoralis Och 149]
KOGKOG12511.00E-156Serine racemase
nrgi|672128003|ref|XP_008787479.1|0PREDICTED: serine racemase [Phoenix dactylifera]
Swissprottr|Q7XSN8|SRR_ORYSJ5.00E-178Serine racemase
trEMBLtr|A0A068UNF9|A0A068UNF9_COFCA1.00E-177Coffea canephora
TAIRAT4G116401.00E-156serine racemase

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000006843144204343541-
Transcript Sequence

Network for GWHGAAEX014454

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00291.24PALP273191.00E-74
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12235SRR Metabolic pathways map01100
Pyrimidine metabolismmap00240

Gene Ontology

GO term OntologyName
GO:0006520Biological Processcellular amino acid metabolic process
GO:0030170Molecular Functionpyridoxal phosphate binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms16.930
SRR2545915Juvenile tuber21.030
SRP108465SRR5643513five period of Gastrodia elata21.200
SRR5643514five period of Gastrodia elata25.560
SRR5643515five period of Gastrodia elata18.280
SRR5643524five period of Gastrodia elata21.290
SRR5643525five period of Gastrodia elata16.220
SRR5643528five period of Gastrodia elata17.830
SRR5643658five period of Gastrodia elata26.350
SRR5643659five period of Gastrodia elata21.050
SRR5643660five period of Gastrodia elata18.350
SRR5643661five period of Gastrodia elata18.260
SRR5643662five period of Gastrodia elata16.880
SRR5643663five period of Gastrodia elata17.830
SRR5643664five period of Gastrodia elata18.990
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_121.560
SRR6049655Rhizomagastrodiae_C368-T10_good_125.690
SRR6049656Rhizomagastrodiae_C368-T07_good_123.930
SRR6049657Rhizomagastrodiae_C368-T07_good_119.120
SRR6049658Rhizomagastrodiae_C368-T04_good_118.490
SRR6049659Rhizomagastrodiae_C368-T04_good_116.240
SRR6049660Rhizomagastrodiae_C368-T01_good_119.830
SRR6049661Rhizomagastrodiae_C368-T04_good_117.620
SRR6049662Rhizomagastrodiae_C368-T01_good_130.050
SRR6049663Rhizomagastrodiae_C368-T01_good_126.820
SRR6049664Rhizomagastrodiae_C368-T10_good_136.420
SRR6049665Rhizomagastrodiae_C368-T10_good_136.420
SRP279888GastroGastrodia elata tuber 18.20
JuvenJuvenile tuber17.05
Mother_GastroMother tuber of Gastrodia elata 9.20
Mother_JuvenMother tuber of Juvenile 7.64