Gene detail

Detail information of GWHGAAEX014457/evm.TU.scaffold_59.239

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|695028625\|ref\|XP_009401697.1\|	6.13E-134	PREDICTED: putative lysozyme-like protein isoform X2 [Musa acuminata subsp. malaccensis]
Swissprot	tr\|Q9S7C9\|ESCA_ARATH	1.00E-12	Putative DNA-binding protein ESCAROLA
trEMBL	tr\|M0T092\|M0T092_MUSAM	3.00E-131	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr5P20630_001}
TAIR	AT2G45850	1.00E-80	AT hook motif DNA-binding family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000068	4410969	4426779	-

Transcript Sequence
>GWHTAAEX014457 CAAATTCCCATAATATTTTTCTTATTATCCTTTCGGCTAGGAGTAGGACTATATGGCTGTAAGCCTGCAGCCTATAAAAGAGAAAAAAGCGAAAATAAGAAAGCTGATAGGGTGGGCAGTTTTCTTCTCTACCATTGCCTGTCCATCTCTATAATTTCTCCTCGCTTCGGTGTCTGTGTGTTCATCCTATGGACCCATGCCTTTCTAGGGTTTGCTTTTGCTTCTATCGACGCCATTTCTTGGCTAGCTACCTCGGCTGCGCTTGAACTAGAGTTTTTGGTTCTGTACGTCCCTCTAGATAATGGAAAGCTGAAAAGATACACGTGTTATCACTTTTGGCTTAGGGTTTCCCGGTTTCTCCTCCAGCATCGGCACAAAAATTGAGAAATATCGTGGATGAATTCGATCAAATCGACGTTTCATGTTATTTGTGTATTTGGACGTCGAGAATGCCAGAATTATGAGTTTGCAGGTTCTATTTTGAAAAAGATACCCGAAATGCGAGCCTTTTTATCCTAACGTCGCTACGCTTGTCTTCTCAGTCCCTTCTTCTAAACAAAAGGAGGAGGATTTTTGTTTCATTTTCATAAACTTTGATCCTCGACATCGATCCGTGTCGGGAGCTTTATCGTTGAGACCTGTGACCTAGGTTTCGCCTTGGCGTCTTTTCCTTGGCTTCTGCTGGAGCAAGAACTCGAAGAAAGTAGTTGCTGTGATCCATGCATGGATGGTAGGGAGGGCATGGGGATGTCCGGCCCAGCCTCGTACTTCATGCACCGAGGCATGGGAGCGCCGGGAACTGGCTCGCAGCCCAGCATACATGCGCAGCTCGGAATTGCGCGTTCAATTACCAACCTAAACCCAAGTTTTTCCGTCCAGGCTTCGGCCATTGCTGGTTCCGGAGGCCTCGGCATTGGAGGGGCGCAGGGATCAGCTTTCCAGGCTTCGTCACTCCCTACAATTTCCCCTCACGGGTTCAATATTGGTCCATGCGGCGGTAGTGGCATTGGAGACAGCGGCATTTGCATGAGCCAGACTGAGCCTGTGAAGAGGAAAAGGGGGAGGCCGCGGAAGTACGGACCTGATGGATCTGTGTCGTTGGCTCTCTCTCCACTTTCATCTCCGCCATCAGTTTCCGGTGCTGCTTCTGGCGGGCCTTCAGGGTCTGGATCGGGATCTGGAACGCCGACCCAGAAACGGGGAAGAGGTCGACCTCCAGGTACTGGAAGGAAGCAGCAGCTGGCTTCACTTGGTGAATGGATTGTTGGATCTGCTGGAATGGGCTTCACTCCTCACATCATAACAATATCAGTTGGAGAGGATATTGCATCAAAGATAATGTCATTTTCACAGCAAGGACCAAGAGCCATATGCATCCTTTCAGCAAATGGTGCTGTTTCAACAGTGACACTTCGACAACCCGCCACTTCTGGTGGCACAGTGACTTATGAGGGTCGATTTGAGATTCTGTGCCTCTCGGGATCATATCTGTTGAGCGAAGAAGGCGGAGGCGGATCACGTGGCCGAAGTGGGGGCCTAAGCATCTCTCTTTCAAGTCCTGATGGAAGAGTGATTGGTGGTGGTGTTGGTGGTCTGCTTATAGCTGCAAGCCCAGTCCAGGTGATAGTGGGTAGCTTTATGTATGGCAGGAGCAAATCGAAGAAGGCTAAGACGAATCAAGCAGAAGCAGATCAAACCAACCATTCAGAGGGAGATAAACAGCAGCCAATTGTGCTCACCAGCAGCCTTCCCAGCCACAGCCACACCCACAGCCACAGCCACACCCCATCTATGCTGGGCGGATGGGCAAGCGCCAGAAATGCTCATGTCGACATCGACTTGATGCGCGGGTGATCTCCATCTCTTCATCCCTCTCTCTCTCTCTCTCTATATATATATATATATATATATTTATAATGTTTTGTATGTACATCATGATGTGATTGGGAGAAGAAATTGCTGGTGGAATGAGCATATGATTGGCTGTGGCTATATATTATTATTGTTATTATTGATGCTACATATTGCAGAAACCACTTACTGCTTTTAATCTGTTTATCTTGCTTTGTAACAACAGAATAGTTTAGGTAACTCAGCAGCTTTACGTTATCCTGTTATTATTTTTATTTTTGTTTATTATTTTTCCGGTCTTTTTATTGAGGCAGGATTTATATATTTGATTGCCTGTTTACTATGTGGAACGATTTTGTACTGTAAGCTTCAAGATTCGGAAATATATGTATCATGTTGGCTAATTTATTGAATTCACATACGAACTGCTTAGGAAATTGTGCCATTATTATTATTTAACTTTTATATATTTTTTTATTAATTTAATTTGGAAACTGC

Network for GWHGAAEX014457

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module2

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03479.14	DUF296	189	305	7.80E-29

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	Molecular Function	DNA binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	38.290
SRP064423	SRR2545915	Juvenile tuber	57.020
SRP108465	SRR5643513	five period of Gastrodia elata	33.680
	SRR5643514	five period of Gastrodia elata	24.900
	SRR5643515	five period of Gastrodia elata	26.960
	SRR5643524	five period of Gastrodia elata	29.690
	SRR5643525	five period of Gastrodia elata	129.230
	SRR5643528	five period of Gastrodia elata	132.870
	SRR5643658	five period of Gastrodia elata	131.530
	SRR5643659	five period of Gastrodia elata	55.810
	SRR5643660	five period of Gastrodia elata	80.870
	SRR5643661	five period of Gastrodia elata	58.920
	SRR5643662	five period of Gastrodia elata	73.100
	SRR5643663	five period of Gastrodia elata	90.440
	SRR5643664	five period of Gastrodia elata	100.330
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	17.070
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	15.370
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	15.960
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	19.010
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	17.890
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	18.290
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	15.960
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	24.960
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	18.240
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	14.200
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	23.470
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	23.470
SRP279888	Gastro	Gastrodia elata tuber	128.15
	Juven	Juvenile tuber	28.04
	Mother_Gastro	Mother tuber of Gastrodia elata	79.48
	Mother_Juven	Mother tuber of Juvenile	71.39